ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584304 | iPS derived chondrocytes
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX3584302: iPS derived chondrocytes

◢ SRX3584303: iPS derived chondrocytes

◣ SRX3584304: iPS derived chondrocytes

◢ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◢ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◢ SRX3584310: iPS derived chondrocytes

◢ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◢ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
NEUROG2
RABL2A
NUP205
ZP4
POLR3F
DZANK1
PSMD1
NME6
NEUROG3
MAPKAPK5
TBCK
AIMP1
NVL
HSPA9
POLR2E
NUP85
ARHGAP10
CACTIN
IPO13
HES3
DYNC1LI2
ZNF503
BLCAP
PES1
RWDD1
TAOK3
SUDS3
RPL21
FARSB
C19orf48
FAM187A
EFTUD2
CCDC103
VDAC2
GOSR2
PAK1IP1
C6orf52
MRPS7
GGA3
VTI1B
NCLN
SART3
ISCU
ACTR10
DCTN1
PSMG2
CEP76
PNO1
SEC61B
SF3B3
COG4
DUX4
HES1
EXOSC5
BCKDHA
SUPV3L1
UFM1
SKP1
TSN
IQCG
RPL35A
ATP5MG
PCBP1
TSNAX
PSMD12
ANAPC7
UPF2
MRPL11
RPS27A
CLHC1
STAM2
SLC35B1
STAM
LYRM4
FARS2
COX7A2L
DPH6
REXO1
SRD5A1
NSUN2
CDX2
ZNF576
IRGQ
ZRANB2
HADHB
HADHA
TMED1
RPS12
RBBP5
TTC8
VEZT
FGD6
SELENOF
HS2ST1
PI4KB
SMC2
FRG2C
CAPRIN1
MRPS5
FAM104A
C17orf80
XPNPEP3
ST13
ATOH1
PAF1
MED29
OSGEP
APEX1
IGFBP2
NDUFA4
RBKS
BABAM2
VARS1
NBAS
LZTS1
EIF4ENIF1
GADD45G
GOLGA5
INSM1
ADK
AP3M1
PMAIP1
CCDC33
MALRD1
PDAP1
BUD31
USP1
RPS23
ATP6AP1L
RABGGTB
PROSER1
NHLRC3
ZDHHC1
TM9SF1
ICE1
NFKBIL1
DDX39B
ATP6V1G2
LEFTY2
PTGES2
HOXA4
PHOX2B
KDM8
NEUROG1
SEC11C
BICRA
RPL7
RDH10
APOM
BAG6
CR1L
PIN4
BNIP3
RPS29
LRR1
SUCLG1
CACNA1D
STK36
RNF25
SULF1
ST18
ARHGAP11A-SCG5
ARHGAP11A
TMEM120B
PAX6
ABLIM3
KRT20
MOBP
COMMD1
CCT4
CDX1
TAF9
RAD17
AK6
DLL4
OAZ3
FZD8
SLC10A2
OR6B2
NDUFA10
NEUROD1
TPM1
EPHA5
PANK4
HES5
CLDN2
PRUNE2
TCF7L2
TTYH1
LRATD2
CPSF4L
IGFBP6
SOAT2
CNTN1
UBE2I
DMBX1
FRG2
C16orf91
DCTN3
ARID3C
SALL1
TPRA1
RPN1
CDC42EP2
GADD45GIP1
NUTM2D
ADAM18
GORAB
HOXB3
HOXB4
SMC6
GEN1
ZNF383
PDE6B
MUSTN1
ITIH4
HOXD3
ERRFI1
RBBP7
PRRX1
TBC1D8
SPACA1
PDE12
CCN1
WDR59
SKIL
TESC
RAI14
DLX4
GAD2
SYBU
MRTO4
EMC1
DSCAML1
HHIP
FJX1
TIGD1
EIF4E2
HOXB1
HOXA3
PDHB
HOXA2
ALKBH5
CNPY2
FGF19
GTF3A
PAH
ASCL1
HES7
METTL24
KDM2B
PCBD2
NEK3
SALL4
ZNF746
KIF26A
PDHX
APIP
EIF2S3
HNRNPA2B1
CBX3
ZFX
PTGR1
RBPJ
CATSPERG
EVA1A
STOML2
ADGRL2
RPH3A
ZGPAT
ARFRP1
REV3L
STRA6
TMEM107
PDPN
CDON
HOXB8
HOXB7
EIF2S1
ATP6V1D
ANK2
METTL11B
KLF17
NOXO1
GFER
TSHZ1
ZADH2
GTF3C4
DDX31
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
AXDND1
GFRA3
LRIG1
CYP51A1
TMEM14A
TLE4
BFSP1
MYO10
CLGN
CAMTA1
MRPL38
THRA
RPS24
POLR3A
HNF1A
VOPP1
REC8
SNCG
MMRN2
OTX1
HOXC5
HSPA1B
ID1
CDH16
NFE2
CCDC200
CNTN4
DHX32
TMPPE
GLB1
ADM
RARB
LIG3
LRGUK
MSX1
LBX1
P2RX6
MEIS3
MEIS2
SLC35E3
STK38
DDX3X
LIMCH1
LIN28B
SOX6
PCDH11Y
TPST2
ABCB5
PAX3
TLE3
AGO1
HOXA5
LRIG3
TLN1
CREB3
ALOX5AP
CD99L2
CPLX1
CPN2
WDR74
DAAM1
TRABD2B
SOX21
CSTF2T
TCF4
QPRT
EIF4E3
ZFHX4
ZNF367
PANK2
H3C12
H2BC17
H2AC17
RARA
RGS12
SH2D3C
BNIP2
USP17L20
USP17L22
BRWD1
HSPB8
PAX8
PJA2
PLEKHA5
GAS1
DAPL1
C12orf73
DLG4
ACADVL
PNKD
TTLL6
SOCS3
PLAGL1
PRDM12
PCBP4
SLC44A3
SNX1
CIAO2A
TTI2
NEDD9
FAM107A
NELFA
ID2
BBS9
CDCA7L
CDC73
ANKLE2
ID3
SEC22B
DUSP6
MYLK4
FOXP2
SP5
DNAJB7
ARID3B
GATA4
TMEM70
ELOC
TLE2
MYRIP
SMPDL3A
TRIP10
GPR108
MTRNR2L2
MSH3
DHFR
POP5
GRSF1
NR2F1
ARSG
KAZALD1
MTRNR2L1
RUNX1T1
FOXP1
HOXC4
KMT2A
TBX3
CYP26A1
RASSF2
MSX2
MRPL34
ABHD8
LPIN1
SH2B1
IER3
FLOT1
NDUFS7
FGR
PKDCC
IFI16
PLEKHO2
INAFM2
MBD2
SPCS1
GLT8D1
CBX4
SPATC1L
DBX1
RNF149
SH3BP2
UPF3A
HOXA1
CS
LYL1
ZNF608
HUS1
DHRS3
HEXIM2
KDM6B
ETFBKMT
LIN28A
RPS10-NUDT3
RPS10
ARID5A
CITED2
ABCG2
NEO1
TLE1
ZFHX3
KCNAB2
JAK3
ARHGAP24
MRS2
PARK7
CCPG1
C15orf65
RPS6KA1
DDA1
SEC14L1
SRSF11
LRRC40
FRAT2
C11orf24
SASH3
PDZRN3
KAT6B
HNRNPD
ATG16L2
HOXC6
KIF21B
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
UBXN10
NCOR2
GRHL3
LYPD1
KDM3A
PRDM10
SLCO4C1
CCDC88A
SLC7A5
SPECC1
ARHGEF10L
NADK
ERCC1
PHC2
DGKZ
FGFRL1
BIN2
ENO1
WDR6
NBEAL2
NKD1
SKIV2L
NELFE
EFHD2
FAM110A
NCOA2
TMEM104
NAT9
MTMR4
DIAPH1
ZNF76
EMP3
CCDC114
NBPF1
USP15
PLEC
WNT10B
SNX3
POR
USP17L11
LRRN4
MEF2C
TRAF4
ZSWIM6
MEF2D
USP17L18
USP17L21
USP17L12
KMT2E
CABIN1
MXI1
RASSF5
LPCAT3
MTRNR2L8
LNPEP
RARG
IMPG1
SPG7
DENND2D
PPP1R18
CDC42EP3
SHOX2
RSRC1
CCDC174
DIAPH3
IQCH
AAGAB
NFKBIA
HEBP2
CBFA2T3
ZCCHC3
MAMDC2
CD38
VAV1
ZNF414
INAVA
BCL3
TRERF1
RAC2
ATP23
ZNF718
ZNF595
CMTR1
PCNA
POLR2J3
TUBB
SYNPO
IQGAP2
MEOX1
TYRO3
NTRK2
ING1
RNASEH2B
GPAA1
EXOSC4
PPIB
MINDY2
H6PD
CNOT2
SLC9A1
SIRT4
OTUD7B
FTL
RXRA
GALNT10
PKN2
NDFIP2
MAPKAPK3
PLCB2
SMAD3
RYBP
USP3
ADCY7
TRIM48
SHB
NKIRAS1
TXNRD1
MUC12
PEX14
DFFA
FAM120B
ARHGAP4
YTHDF2
SMARCD2
PKM
IFRD2
PCTP
PRDM1
HESX1
CFD
TLE6
MRPS24
SLC35E2B
TBRG4
NR1D2
ADORA2A
COL23A1
RNF166
CYCS
RNF139
RAB11B
IGF2BP3
ANKRD1
SH3TC1
DYNLL1
SP7
ZDHHC4
BAIAP2
CEP41
HMGCS1
ARIH2
MECOM
CBWD5
CBWD3
LTBR
TUBB3
ANKMY1
DPP9
SBF1
PIK3AP1
CLIC4
ARID2
ERI3
ZNF740
CSAD
SOD2
KCTD6
SEMA6D
CPT1A
DTX4
IL6R
PRSS56
AKIRIN1
SLC35E2A
ABHD11
KANSL3
FER1L5
CYTH4
HOXB5
MYEOV
PDE4D
PTGES3
HAND1
FOS
NR2C1
MBD6
DDIT3
TMEM222
NOTCH2
FAF2
C12orf29
RND3
SRPRA
RBL2
NXPH4
FCHSD2
SSX2IP
DMRT3
CTTN
PXYLP1
ZNF341
AHDC1
ATXN1L
UPP1
SNAPC3
CD164
TBX2
TRMT6
MCM8
SLC39A13
CSRNP1
BAZ1B
SLAMF8
CALM2
ANKRD13D
DTNB
RNF103-CHMP3
RMND5A
TYROBP
UNC13D
SEMA4D
TSPAN16
PRRC2A
AIF1
PIP4P2
LAPTM5
MAP2K1
MYADM
CENPH
ZNRD2
GATD3B
GATD3A
FAM89B
EHBP1L1
CLTC
SEH1L
RFESD
ZNF25
VANGL2
USP42
ARHGAP45
RXRB
MTCH1
MAD1L1
SYNJ2
KCNH2
IL21R
CXXC4
ZNF3
STX18
PHF19
PPCDC
DGAT2
THRAP3
RNF125
SLC43A3
LYPD6B
ERLIN2
RASGRP2
ARHGEF1
PEAK3
MRPS31
H2BC5
H1-4
COX5A
RAD50
MIDN
NAGLU
MAP1S
EPM2A
PDE1B
EIF4H
PKNOX1
ATP8B4
HSD17B8
ZBTB17
PSMD3
PIKFYVE
SPATA25
CTSA
HECTD3
BHLHE40
KRI1
CDKN2D
NR1D1
ARL4A
SBNO2
SDE2
KAT6A
FBXO41
RWDD2A
PGM3
MAPRE2
ARHGEF38
SMPD1
ZBTB25
ZBTB1
KEAP1
MAPKBP1
WT1
BCAT2
TNFRSF19
FMNL1
PRKCD
GATA3
CPVL
CHN2
WTAP
CCDC88B
STRADA
NUBP1
TMEM123
CBWD6
MTF2
SLC22A2
CASC3
TCHP
SLC39A7
IFNGR1
ASNS
GRK6
MAGEF1
MYCBP2
ZNF318
CPNE5
RCOR1
PEX3
ADAT2
PRKDC
MTRF1L
MCM4
LSM5
AVL9
NIBAN3
USPL1
HMGB1
NTAQ1
MC1R
FXYD2
USP17L15
RASL10B
UBL7
C1orf159
ATAD3B
SCMH1
ITPRIP
GPX4
MAST2
OR2L13
OR2AJ1
SACM1L
DYNLT1
NGRN
SH3BGRL3
RGL1
MCU
BUD13
BNC2
TIGD5
EEF1D
DPEP1
SCAMP2
VPS37C
RUNX1
RNPEPL1
RER1
MORN1
CAPG
GRIP1
CISH
NIBAN2
DLG2
EOLA2
ZNF436
ARF3
GPSM3
GPATCH8
RPL17-C18orf32
RPL17
C18orf32
TAF12
NCBP2AS2
NCBP2
LGALS1
OST4
LIX1
ARHGAP27
YBX2
USP21
CYB5R4
GPR176
ARHGEF18
GABRB2
MRGBP
DONSON
DNAJB8
ATAD3A
CNOT6
KLHL25
JAKMIP1
KIF1C
INCA1
METTL25
FAM227B
DTWD1
DDX23
CCDC59
TDP2
DENND1A
CNPY3
ACOT13
RAP1GAP2
TMEM65
FABP5
YY1AP1
PTEN
KLLN
DAP3
C12orf65
HPF1
ADAM17
PGK1
MDC1
NINJ2
SCAF1
RRAS
MT2A
ACOT2
PCMT1
KMT5A
SPDYE14
SPDYE10P
NMNAT1
LZIC
SYPL1
GADD45A
UBE2L3
SPIN1
RIMBP3C
RIMBP3B
TSPAN4
POLR2L
SLC9A3R1
NUDT15
GOLIM4
CEP135
CCNL1
ASB1
NANP
PTP4A3
CACYBP
GSPT1
PTDSS1
MTERF3
SPTBN1
ARID1A
SERTAD2
GBX1
RNF130
UNK
EIF3D
MTMR1
CDS2
MFN2
EHD1
ATG5
HYLS1
POU2F1
GYPC
LTB4R
LTB4R2
CIDEB
TRAP1
C21orf91
ZNF219
LANCL2
FOXD3
RPLP1
RITA1
DDX54
APBB1IP
POLG
ADAP1
IQCE
FLI1
CTSC
TKFC
DDB1
DISP3
ZCWPW1
MEPCE
ASH1L
ZCCHC24
SNUPN
PSMF1
HMGCL
LRCH4
FBXO24