ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5501661 | A-375
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◣ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

WDR74
GSTA4
H4C14
H4C15
MTRNR2L2
NUF2
MTRNR2L8
FRA10AC1
EIF2D
DSTYK
DCP1A
S100A2
GBA
TRIP4
RAD54L2
TBC1D19
H1-2
HMGB1
USPL1
CDK5RAP1
STX16
SCAND1
CWC25
DRG2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
SF3A3
RBBP5
POLDIP3
RPS7
STX18
NDUFS3
KBTBD4
DHX8
H4C11
PLEKHM3
ATP5MC2
TBL3
NBPF1
RPL37
SAR1B
TRIAP1
H1-3
RGPD2
RGPD1
SMARCD2
GEMIN7
S100A16
RCAN1
SELENOH
NME1
CTNNB1
CCNL1
ZBTB45
SECISBP2L
SSBP1
CRB1
UTP3
H2BC21
H2AC20
H2AC21
TTC26
MRPS23
SLC24A1
MTF2
GTF2H2
H4C6
BNIP1
H2AC19
H2AC18
INTS12
GSTCD
MAN2C1
RPS6
WDR36
FAM3C
YWHAE
MLEC
SERPINE2
RPS2
H2BC18
H3C13
ERCC1
DMAP1
LY6K
DPP9
LRRC37A3
GTF2H2C_2
GTF2H2C
SNAP47
JMJD4
AURKAIP1
TATDN3
NSL1
TUT1
PSMF1
PPP6R1
RAB5IF
ATF6
STAT3
RBM15B
LAMP1
TBC1D13
MRPL30
MITD1
H3C3
TARS2
TMEM222
H3C15
H3C14
ALG10B
RPS27
MYO9B
HAUS8
FOXJ3
C17orf75
YIPF2
TIMM29
POLG
METTL25
CCDC59
RARS1
EFCAB2
MRPL16
SCNM1
LYSMD1
H1-4
TBL1X
RPL12
LRSAM1
H4C12
C12orf57
PSMD3
NOTCH2
SMG8
KMT2C
RPS20
FAM227B
DTWD1
GTF3C3
KDM1A
DDIT4
COMMD9
MRPL21
IGHMBP2
NOC4L
DDX51
JRK
COX5A
KBTBD6
SLC35E2B
TACO1
COMMD2
LARS2
PDCD6
NR1H2
NDUFC2-KCTD14
NDUFC2
U2SURP
SLC44A1
MDM4
UBQLN4
LAMTOR2
SIRT4
KRR1
ZNFX1
SDHAF3
MED18
ZER1
TAGLN2
TSSK6
NDUFA13
AGK
RANBP2
GNAI2
COQ8B
NKIRAS1
RPL15
FAM98B
MAPK1IP1L
NOB1
NUP107
CDK2AP1
TCEA2
TTC1
RUVBL1
MTERF4
NCBP3
SSBP2
SAMD4B
SPRY4
NMNAT1
LZIC
RPS28
NDUFA7
ATP5MPL
TAMM41
H3-2
MED23
TSPAN10
NPLOC4
PRKCE
SEC16B
TSC2
NTHL1
SEC13
MTIF2
DPY19L4
CDKN2AIPNL
NDUFA12
KLHL12
CCDC90B
TVP23B
MRPL58
PPRC1
GALK2
COPS2
USP4
WDR24
HEATR1
PMS2
AIMP2
MRPL1
MKRN2
ASB6
SLC25A51
CDC73
KANSL3
MBTPS2
NPAS4
MRPL19
METTL9
CUL4A
PCID2
INTS1
POLR2J3
DDX1
FRG1
KDM8
PSMD11
ANP32E
KLLN
NLE1
PTEN
SRSF4
KNL1
RPS3
VPS25
NSFL1C
MRPL53
PDE8A
FXYD3
INTS5
GAPDH
TTPAL
ARL2BP
DCAF10
AAR2
IQCH
AAGAB
BUD13
RINT1
UBOX5
FASTKD5
CCDC88A
ZBTB37
VPS33A
SNRPB
H4C4
ZSCAN22
NCOA3
H4C5
RBM39
TRMT61B
TMED2
MAT2A
CLUAP1
PRKCSH
CCDC151
GFM2
PDE4DIP
SLC25A32
DCAF13
NFE2L2
LONP2
ABCC11
EIF3E
ID1
ADPRHL1
SLC25A13
PEMT
DPH7
DNAJC24
DCDC1
UQCC1
TOR1AIP1
UBL7
DNAJC11
POMP
AP5Z1
BBS1
SLC20A1
STARD4
MICALL1
CATSPERG
H3C8
YWHAZ
FBXO46
SSNA1
ANAPC2
TTC4
YARS1
S100PBP
VTA1
NMBR
H4C9
SNAPC5
AP3B1
ALDH7A1
FBXW2
CALM2
H2BC8
H2AC8
RMDN2
PARP2
PHLDA1
ST3GAL2
NUP153
ELAVL2
SNRPB2
WASHC2A
MRPL38
CCDC15
DDX59
RPL27
SLC35E1
H4C3
CHD1L
PRKAB2
LZTR1
ZNF3
LRRC46
WDR31
H2BC11
H2AC11
PANK4
DFFA
CIAO3
PPIP5K2
USP30
SACM1L
OGT
H4C2
ALDOA
GOT2
SPRY2
PA2G4
PPP6C
ZC3HC1
HEXIM1
RHOT2
AP1G1
GARS1
H4C8
ZBTB40
VPS4A
LRATD2
PSPC1
ZNF721
PIGG
H3C2
TPT1
LIMA1
TMEM101
SNRPE
TSNAX
ZMPSTE24
PRPF6
ELK4
TCHP
UBA2
H2BC17
H2AC17
NUP188
DOLK
CCDC125
MRPL24
KIF15
KIAA1143
TEFM
PSMD9
HPD
GORAB
NAGK
EPHA3
CCAR2
MRPL40
HIRA
NECAP2
ECSIT
DISC1
EEF2K
WWTR1
AGMO
BANP
CCDC174
AP2B1
ZC3H10
TRPC4AP
HDGF
ZSCAN25
SRRT
RAD23A
ZNF770
PPID
ZCCHC4
PARK7
ARL14EP
G6PC3
CDK12
COG2
WIZ
NRF1
TSR3
GNPTG
EPRS1
SLC9A1
SMG7
C1orf53
PRRG2
NOSIP
SH2B1
TUFM
TTI2
MRPS31
TOP3B
GOSR1
VPS72
POLR3E
B3GAT3
ZNF594
MRPS24
DHRS3
TRIM62
USP48
UCHL5
RO60
ATP5MF-PTCD1
ATP5MF
COMMD1
ANXA2R
STYXL1
MDH2
AMOTL1
GID4
ATPAF2
SART1
WDR70
ATR
MRPS14
NME6
RRP9
PARP3
EIF3H
RPL10
SYMPK
FOXA3
TMEM127
CIAO1
SLC39A13
MTMR2
CSRNP1
CHMP4B
ZNF212
IPO4
POR
CREBL2
SYT5
STAT1
TOB1
ZNF106
PAFAH2
DDX23
FBXO38
SMG5
RPTOR
CSDE1
NOC3L
TRIM16L
LENG8
KEAP1
DMTF1
COQ5
H2BC14
H2AC14
CSNK1G3
AXL
NDUFS7
LDAH
DDX46
PDE12
ERLEC1
ASB3
MUL1
DR1
KLHL20
GPS2
TRMO
PRDX1
RNF168
ILF2
EXOSC8
PRCC
INO80B
NFKB2
MRPS15
ZNF148
RUSF1
ISG20
COPS6
TTC32
R3HDM2
CASC3
PRDM5
CT45A7
CT45A6
CT45A9
CT45A8
CT45A5
CT45A2
ING4
RBM28
TRMT6
MCM8
BRMS1
MCRS1
S100A13
CHTOP
BCAT2
SCRIB
PIGU
TIMM22
RAD52
USE1
DNAJB12
CLUH
COQ9
CIAPIN1
WASHC2C
RFC2
TRMT1
SRSF7
SLC26A2
TAS1R1
NOL9
VPS28
H2BC4
H2AC6
IFNAR1
HTR5A
LRRC29
RPL29
TMEM199
POLDIP2
PCBP2
ARL8B
CNOT2
LRRC59
ATXN2L
EEF1A1
RPL41
H2BC13
H2AC13
SLC12A2
BFSP1
SLC25A45
KRT8
KRT18
TMPRSS5
SLX1B
SLX1A
BOLA2B
BOLA2
SNRPD1
AAAS
PRR19
PAFAH1B3
AMACR
FGFBP3
FOSL1
SNX17
EIF2B4
TOMM22
MIA3
LRWD1
ALKBH4
TOMM7
TRIM46
KRTCAP2
SPRED2
HSPA8
STT3B
TFB1M
PYGB
MPHOSPH10
MCEE
SCO1
ADPRM
ARHGEF12
LOC112694756
ZNF185
FAF1
SMIM14
RIN1
CALR3
C19orf44
IPPK
KCTD5
SASS6
CCDC124
BMS1
HSPA9
FOXO3B
ARHGEF7
TMEM179B
TP53I3
UNK
RPS6KB2
STOML2
MFAP3
FAM114A2
ZSCAN30
RPL7A
MED22
TAF1B
C16orf72
MSANTD2
OCEL1
UQCRC1
ADORA2B
PGAP4
FAM168A
SEC14L1
SCAP
ALG14
ATP6V0D1
MRPL4
ANKRD13D
TRNAU1AP
RPL7
H3C4
MEMO1
NT5C
ZNF350
WASHC4
ZNF668
ZNF646
SMIM12
NDUFAB1
ZNF398
ZNF425
DCAF8
TDG
MRPS21
TPK1
C11orf49
TUT7
USP1
FAM228B
SF3B6
NOL11
DYM
ADAR
SOS1
NUP133
MAZ
MNAT1
LRRC49
THAP10
GRB7
IFRD2
STAU1
SPATC1L
PSMD6
TOB2
PUM2
DDX27
LDHA
MAD1L1
DYNLRB2
CAMKK1
ANKRD54
HIF1AN
EIF3L
GPAM
WASHC5
NSMCE2
TMEM126A
NUCKS1
PDS5A
RFFL
DPY30
SH3TC1
SPRYD4
THOC5
TIGD6
HMGXB3
MRPL39
TMEM250
MAP2K3
RICTOR
COX7C
LUC7L
HIRIP3
COPS4
PURB
ZNF696
STIP1
CSTF1
AURKA
NXF1
QTRT1
AVPI1
KXD1
TMEM62
SH3TC2
CASZ1
GTF2H4
SMN2
SMN1
YJU2
APH1A
CATSPERE
SYTL2
TSSC4
PNPLA6
EIF3C
EIF3CL
ADPRS
MRPL11
TSFM
POLR3D
RPL32
CYB561
HIPK1
AATF
DBR1
PLK2
RFX1
NR1H3
ACP2
CEP350
EFTUD2
CCDC103
CGGBP1
MCOLN1
G3BP1
RPL5
C3orf38
ICE2
FAM200B
C19orf53
GINS3
SPNS1
COX7A2
GNB2
RPL30
DCPS
MAML3
RPS13
GGPS1
ARID4B
BABAM1
ZC3H6
DNLZ
RPL38
CYCS
CCDC86
KLHDC10
MGST3
TXNDC15
ATAD3A
RAD9A
ATF3
ADK
SPRED1
AGL
NUP214
THEM4
THUMPD3
C11orf65
ZNF846
DSN1
OR2L13
PEX12
PSMB4
DDX18
RANBP6
HINT3
SCAF11
FCRLA
C1QTNF3
KPTN
UBR4
PKIG
SNF8
KMT2D
EXOSC6
SLC35B1
TPM3
TMEM168
BTBD1
RPL21
UTP6
RBM12
CPNE1
SRRM1
ATRN
JUNB
FBXO27
GET4
SRFBP1
RCOR3
DHPS
CCDC107
ZNF518A
CEP78
ALDH1A3
KCNMA1
CLTC
TRMT10C
PFDN4
FBXW9
FAF2
H2BU1
H2AW
MINDY2
BRD2
SF3B2
GAPVD1
GPATCH4
TEX261
METTL2A
H2AX
ATAD2B
NUDT15
TRIP6
NUDCD1
TRAF7
SERBP1
NOL7
TFRC
PIGL
RAF1
CLPTM1
POLD3
H3C1
H4C1
C8orf37
LSM11
SRCAP
LOC730183
GATAD2A
TRIB1
ZNF410
TM2D3
DDX50
BRIX1
METAP2
ACBD6
PGAM5
SLC35B4
UBA52
ILF3
RPL22
ABT1
CUEDC2
PPP1R15B
RCHY1
MRPL27
EME1
DNAJC25-GNG10
DNAJC25
EEA1
RPLP0
TMEM259
CCZ1B
TCF12
MAP2K2
PCOTH
MIPEP
JOSD2
RNASEH2A
CAMLG
GTF2H3
EIF2B1
ZNF589
SLC3A2
YTHDF2
IVNS1ABP
H2BC12
H2AC12
NCAM2
DNASE1L1
ARHGAP5
TRAPPC3
PTBP1
INTS4
CCNT1
DYNC2I1
CCDC83
ZDHHC7
WDR35
SLC6A15
TMTC3
CEP290
GPKOW
GEMIN6
XRRA1
SPCS2
MFSD14A
CLP1
AHCTF1
TERF2
TMEM147
MOB4
RNPS1
TOMM20
C2CD4D
MMACHC
THRAP3
HUS1
MND1
TRA2B
RFX3
MT2A
ACOX3
TRMT44
LUC7L2
FMC1-LUC7L2
FMC1
MAPK8IP3
LIG4
USP19
ABHD13
NUDT4B
NUDT4
NIBAN2
UBE2Q1
FZD1
KNOP1
TMEM167B
SPRING1
RNFT2
SCN11A
WDR48
ZDHHC4
METTL26
SURF6
GABPA
ATP5PF
CCDC9
ZNF341
AP3S1
SEC24A
DNAJC27
CFAP20
SYP
TMA16
APTX
DNAJA1
STAT6
GSK3A
ITGB3BP
EFCAB7
ATP5F1B
ANAPC15
TFPT
PRPF31
FBXO28
ZNF337
TMEM39A
GATM
WDR43
SPATA5L1
AASDH
PSMD14
RFT1
SOX5
MRPL45
WDR55
DNAJC22
UMPS
ERCC6L2
FGF1
RSAD1
CT45A3
PNPT1
SETDB1