ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535453 | A-375
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◣ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

WDR74
EXD1
CHP1
SEMA6A
H4C14
STX16
DPY19L4
H4C15
FAM98B
STX18
MTRNR2L2
MRPL21
IGHMBP2
H4C12
DDIT4
SAR1B
GSTA4
NUF2
IST1
H4C11
AAR2
GBA
NR1H3
ACP2
TUBGCP3
FRA10AC1
C17orf75
SMARCD2
NME1
SLC44A1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
H2AC19
H2AC18
UCHL5
RO60
H2BC18
H3C13
GALK2
COPS2
DMAP1
H4C5
TPRKB
PHLDA1
SF3A3
RAD54L2
FEM1B
RRP15
RCAN1
SLC9A1
JRK
GTF3C3
H1-2
RARS1
H3C3
DSTYK
TBC1D19
RPL37
SNAP47
JMJD4
DCAF10
VWA8
RBBP5
ATR
TATDN3
NSL1
EIF1AD
BANF1
NPAS4
H4C4
S100A16
MRPL16
CDKN2AIPNL
H1-4
RPS7
IFRD2
RPTOR
FLOT1
IER3
EIF2D
USP30
TOP3B
NDUFB7
NOTCH2
SELENOH
RAB5IF
MAN2C1
ACOT7
BCL9
WDR31
CDK5RAP1
DHRS3
KMT2C
TRIB3
ZSCAN30
CUL4A
PCID2
MTRNR2L8
C12orf73
NDUFA12
SPOP
BFSP1
DCP1A
GTF2H2C_2
GTF2H2C
STAT3
OGT
YWHAE
SNRPB2
DRG2
CLUAP1
H2BC21
H2AC20
H2AC21
PDE4DIP
SSBP1
TACO1
SPRY4
SCNM1
LYSMD1
COMMD2
VIRMA
TEFM
RPS6
WDR36
KLHL20
TRIP4
TRIAP1
C11orf49
HEXA
BNIP1
S100A2
LRRC47
METTL9
H3C15
H3C14
E2F6
CT45A10
LAMP1
SLC24A1
PEX3
ADAT2
NDUFS3
KBTBD4
MTF2
YARS1
S100PBP
CSRNP1
JUNB
IRS2
WDR24
ZNF212
HMGB1
USPL1
EEF1A1
VANGL2
LARS2
ST3GAL2
ADPRS
TMA16
KANSL3
H3C2
SPATA24
ZNFX1
INTS12
GSTCD
MRPL44
EIF3G
MANBAL
NEURL2
CTSA
ADPRHL1
STAT6
VPS25
IPO4
MRPS23
FBXW2
AP3B1
GTF2H2
ALKBH2
TMEM101
CCNL1
TMEM256
PSMF1
RTN4
IFI16
GPRC5A
PYDC5
DPY19L3
GSTP1
WWP2
SNX17
EIF2B4
PLEKHM3
NECAP2
ALG10B
MRPL3
RPL32
DNAJC24
DCDC1
GUSB
DPP9
NDUFS7
NOC4L
DDX51
TTPAL
VWA5A
TMEM242
ZNF391
AGMO
TOR1AIP1
SLC3A2
CTSC
DMAC1
DDX1
RTF2
DNAJC25-GNG10
DNAJC25
GGNBP2
TBL3
HTR5A
PAFAH2
NFXL1
WDR11
ARHGEF12
H4C6
NDUFC2-KCTD14
NDUFC2
EFNA1
SSBP2
RTEL1
RBM28
SREK1IP1
CWC27
SIRT4
SNRPB
ARIH1
ATF3
TRUB2
COQ4
ZC3H6
ACBD6
H1-3
DDX23
TVP23B
NCBP3
PMPCA
ENTR1
E2F4
RAB18
RCOR3
RPS2
CCDC107
H3-2
DIAPH1
DRAP1
C11orf68
POGZ
INO80C
RINT1
ANKRD18B
MNAT1
KBTBD6
CCNC
KDM1A
IQSEC3
INTS1
CHD1L
PRKAB2
COX16
KCNMA1
SRFBP1
SH3GL1
AVEN
CPLX2
CCND1
ZBTB45
ALG10
MTERF1
EDC4
ZMPSTE24
FZD1
ZSCAN25
PRKCE
MUS81
SEC16B
AURKAIP1
COG2
TPR
ODR4
RBM45
TRIB1
ZNF827
TTC4
FAM227B
DTWD1
SLC25A51
RPS8
RACK1
RILP
DPH7
INTS5
UFSP1
SERPINA3
RGPD2
RGPD1
PRADC1
CCT7
C10orf88
RPL26
UQCC1
KNL1
CASC3
ANP32E
UCN2
PRRG2
NOSIP
LRRC37A3
CT45A7
CT45A6
CT45A3
SLC33A1
GOSR1
PSMD6
ATXN2
TRPC4AP
OTUD7B
CSNK1D
NOC3L
NOB1
PIP5KL1
HEXIM2
ATP5MF-PTCD1
ATP5MF
KMT2D
CDC73
TTC33
POLDIP3
CCDC86
H4C3
MRPL38
THAP5
DNAJB9
WWOX
COQ5
SRA1
NFATC2
DUS1L
FAM133B
RRN3
RPL28
MTAP
H1-0
DHX8
GTF2I
TIGD1
EIF4E2
CPPED1
GRAP2
ZNF106
SRSF6
ILVBL
ZNF253
BANP
ORMDL3
RUVBL1
ZC3HC1
SLC35A3
CHI3L2
LGI4
MED23
RPL23A
BOD1L1
TUT1
PSMB6
NCOA3
PPP4R3B
RFXANK
BORCS8-MEF2B
BORCS8
ZBTB37
RCC1
NSUN4
MTHFS
WWTR1
RPS27
ATF6
MRPL58
BICD1
SNTB1
SOX10
TTI2
ANKRD40
DUS2
DDX28
TAF1C
BAGE5
BAGE4
BAGE
BAGE3
ZNF554
MRPS14
ZNF830
CCT6B
BRD2
RPL11
NBPF1
NHEJ1
RPS14
LSM8
H2AX
TP53BP2
ZSCAN22
RPL29
RPS3A
SUPT5H
ITGB3BP
EFCAB7
FRG1
LRRC37B
SNRPE
NMNAT1
LZIC
RPL13
USP2
INPP5F
CFAP298-TCP10L
CFAP298
FUS
REX1BD
DDX19B
AARS1
RNF216
PYGB
SPIN2B
EXD2
SNX19
LDAH
AP4E1
CCDC88A
RPL7
RDH10
NAA20
HOOK2
ADNP
TAF13
H2BC8
H2AC8
AK3
GPR176
CFAP20DC
PCOLCE
CALR3
C19orf44
C16orf91
TRA2B
CAAP1
SLC20A1
PARP4
ZNF708
YJU2
SEC13
CHCHD2
SDHAF3
SLC26A2
RFX3
KCTD3
ABHD12
SART1
ZER1
THOC5
EIF4A2
ANAPC5
HNRNPA1L2
NBN
MBTPS2
RAF1
RPL41
TENT4A
COPS7B
TBL1X
PBK
NDRG1
ZCCHC4
OSBPL11
C8orf33
LRRC59
MRPL48
AARS2
HNRNPH1
INO80B
MRM3
GLOD4
FAM189B
TRIM46
KRTCAP2
COQ8B
RBM14-RBM4
RBM14
MKRN1
TFAP2B
DNLZ
SPDYE14
SPDYE10P
POLR3B
VPS72
RMDN2
NFE2L2
LYPLAL1
LSM5
AVL9
H2BC14
H2AC14
NREP
PLEKHG5
FAM228B
SF3B6
RPL13A
MRPL39
RPL7A
MED22
WASHC5
NSMCE2
LDHA
ZNF791
ZNF490
SLC36A1
EPHA3
MTR
POLR2J
FANCD2
ERMARD
VPS33A
CAPS2
PCOTH
MIPEP
STEAP1B
TMEM115
SEC61A1
CWC25
VPS45
NDUFAF5
ESF1
MRPL40
HIRA
LAMTOR5
ZNF564
RANBP6
C16orf72
COIL
MARCHF7
CSKMT
C11orf98
RFFL
ZNF443
DEF8
LTBR
UTP3
POLR2J3
DNM1L
SMG8
CDC16
GTF2IRD2
H2BC12
H2AC12
GTF2IRD2B
MEOX2
ZNF56
ARMH3
REXO4
MCOLN1
LIG4
ABHD13
CRB1
APH1B
ZNF45
TOMM20
TAF5
H3C8
LTBP1
PKIG
ZBTB40
LONP2
ABCC11
PARP2
MBNL2
PSMB4
SURF6
TTC26
STMP1
TPK1
DCUN1D5
RBM17
USP4
MAPRE2
PNPO
CDH19
BOD1
LTA4H
FBXO38
NACA
TUBA1C
RBM39
RPL5
STK4
BBS1
KDSR
LRP6
ZNF337
WIZ
ELOB
POLG
CALM2
ZNF76
CEP120
ATAD2B
CHD1
SH3TC2
ZNF205
UNK
TARS2
TAF3
EIF1
MCL1
ID1
TIMMDC1
PRPF6
RPS21
HEMK1
UBXN1
DDX5
CEP95
IPP
ZNF561
TAGLN2
TMEM170A
SRSF5
IL6R
XKR7
MYPN
IDH3B
DCAF8
H4C8
DHX9
COMMD1
CCT4
GRPEL2
CTNNB1
GPATCH4
H2BC11
H2AC11
SACM1L
MLEC
SPRED2
H4C2
PEX2
COA1
RNF6
PRNP
RBSN
SNRPD1
G6PC3
BUD13
PPP2CB
BORCS5
CAPRIN2
IFT46
ARGLU1
PTPN13
APP
C12orf57
CBX5
HNRNPA1
WASHC2C
GTPBP3
KIAA0895
MAGEA2B
MAGEA2
CCDC90B
GFM2
DNM2
ACOX3
TRMT44
EIF2B3
ATP5F1E
CHML
DYNLL1
ERMP1
PDE8A
INTS2
GFOD2
SRSF9
OPN3
FXYD3
BACE1
MTERF4
SLC35E1
THOC3
DIDO1
GID8
LUC7L3
DISC1
CNP
SLC25A21
MRPS15
TIMM10
GNPAT
C1orf131
ALDH9A1
DNAJB1
MC1R
BAIAP2
SPIDR
TECR
LETMD1
SPRED1
OR2L13
FLRT3
TRAPPC3
BMS1
ARL14EP
THEM4
COMMD4
ARMC8
TMEM167B
SRRM1
PKD2L2
ABCA3
ZNF579
SPRY2
SOD2
WTAP
EFCAB2
NECAP1
H3C4
GOLGA4
KLHL9
ESD
INPPL1
ABCF2-H2BE1
ABCF2
SH2B1
C18orf25
RPL35
ARPC5L
ZBTB17
MANF
ABHD2
RPL37A
TRMO
NAPEPLD
SLTM
HM13
ARCN1
USP28
GRHPR
DUSP4
SNTB2
GEM
UBAP1L
PANK4
PSMD11
TMEM186
PMM2
MTRF1
C2orf42
PIKFYVE
ADAM17
H2BC4
H2AC6
ANKRD13D
NAGPA
SLC25A28
MMAA
LARP1
RGL1
ZNF609
ARPC5
DAB2
NAA16
FAM207A
UTP25
TSSK6
NDUFA13
H2BC13
H2AC13
MTMR2
FNIP1
BLOC1S2
CASP7
TIMP1
TMEM41A
MRPS18C
HELQ
SPRYD4
GNAI2
ABCB10
DCLRE1B
AP4B1
B9D1
H4-16
CCDC174
MTMR9
CDC25C
FAM53C
TSN
MRPL1
FBXL18
LRCH4
FBXO24
SEPSECS
DPH6
BTG1
H2BC17
H2AC17
FGFBP3
MIDEAS
LOXL4
ZC3H11A
RPL34
TIGD6
HMGXB3
ARF4
POMP
CIAO2B
CES2
RSL24D1
SLC35A4
APBB3
ATP6V0D1
MAPKBP1
SFPQ
RPL30
CTHRC1
BOC
SLMAP
SLC30A6
MDM4
STX6
SLC39A6
ELP2
SUPT20H
RGS2
LIFR
HMCN1
CEMIP
KCTD5
MTIF2
ZNF696
EMC4
MKRN3
DELE1
CLASP2
NQO1
ZNF506
SLC6A15
EMP1
MAGEA6
AP2B1
RPL12
LRSAM1
SLC39A13
ZNF3
MAPKAPK5
ZFP62
USP3
PIGL
EEF1AKMT2
DPH5
BPTF
JAGN1
LPCAT3
NR4A1
AMOTL2
SPATC1L
AHCTF1
SLC38A9
FOXJ3
RPL6
HIF1AN
SP1
CCDC25
ATXN7L2
RNF115
POLR3C
MAK16
ACBD3
IMPDH2
ZNF282
AFF4
ZNF846
NTMT1
APOD
ACTL6B
DEDD
KIF15
KIAA1143
FAM149B1
ECD
ALKBH3
CLTC
MCAT
SRSF7
ACAD9
FAM3C
TMED2
MAT2A
PIGV
DLAT
NR2C1
COX20
GPATCH3
KDM8
TAF10
PTPN1
ZBTB38
PEMT
WDPCP
MDH1
UBL7
RPL22
PSMD3
RPS28
NDUFA7
RANBP2
POLR3E
HSP90AB1
NR3C1
R3HCC1
AHCYL1
NAA60
SPATA17
GPATCH2
MAPK1IP1L
ARHGEF7
FBXO22
ANKRD12
NCOA7
R3HDM2
RBM7
C11orf71
PDE7A
STXBP3
ABHD11
CT45A1
ZNF513
TMEM60
PHTF2
SUPT7L
SLC4A1AP
SMG7
SUGCT
MPLKIP
TMEM68
TGS1
PCIF1
NVL
FAM162A
CCDC58
TCHP
MPV17
ANKRD46
OMA1
DAB1
EEF1G
AMOTL1
ANKRD18A
NNMT
AQR
EIF3C
METTL25
CCDC59
ERLIN2
RPS23
ATP6AP1L
FARSA
NOXA1
FBXW9
ISG20
SLC39A1
CREB3L4
MYH7B
GSS
BRK1
CHSY1
C1QTNF1
PTDSS2
CCDC124
CPSF1
TMEM39A
MTBP
MRPL13
POLR2J2
DYNC2H1
PLGRKT
TAF1D
C11orf54
FBXO4
TMEM216