ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6066504 | HCT 116
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◣ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

GSTA4
WDR74
KMT5B
KMT2A
ATAD2
FLOT1
IER3
BRWD1
PAFAH2
CLTC
PEMT
DKK1
RCOR3
GOLM2
ZNF276
VPS9D1
RABEP1
RBL1
KMT2D
ERRFI1
LRP6
PHIP
RTTN
RPS7
POLDIP3
GTF2H4
ID1
PHLDA1
GFM2
CALM2
WDPCP
MDH1
AREG
MKRN3
CCNI
IFTAP
DPY19L4
GPRC5A
SIRT4
STX16
PEAK1
HMG20A
ZKSCAN2
MRPS31
TOR1AIP1
ACSF3
COX16
TSC1
GFI1B
DCP1A
LYNX1-SLURP2
LYNX1
DDIT4
MED23
MTF2
NME1
NDUFS7
ALG10B
UBC
GDF15
NSFL1C
H4C3
GEMIN7
WDR11
H4C11
TEFM
H1-2
NDUFB3
FAM126B
DCBLD2
USP30
EIF4A2
REXO4
CTNNB1
ADPRHL1
VPS13B
FAM207A
SMG8
TOP3B
AXL
RPS26
SLC24A1
MRPL39
AURKAIP1
ZFAT
MTBP
MRPL13
ZSCAN22
TRIB1
H4C14
H4C15
BMS1
ITGB3BP
EFCAB7
TNPO3
TRIP12
FBXO36
SAT1
DDX5
CEP95
H3C2
TOB2
CLDN4
IFRD2
CDCA3
SCNM1
LYSMD1
TMEM115
CALR3
C19orf44
PHB
TCEA2
SMPD3
CLPB
BOD1
MMACHC
MRPL24
FEM1A
PNKD
AAMP
GSPT1
ST3GAL2
CHMP4B
NUDCD1
TSNAXIP1
RANBP10
BTRC
TMTC3
CEP290
PPRC1
AP2S1
KBTBD6
PANK4
AHCYL2
KBTBD7
CRTC2
PRCC
MICOS13
HSD11B1L
DDX23
PPP1R12C
C1orf159
LARS1
UNK
CTU1
INVS
ERP44
PPP1R12B
ZFYVE1
PHF12
VCPIP1
C8orf44-SGK3
ZNF225
NTAN1
TSSC4
GTPBP2
BANP
MAD2L1BP
SYMPK
ZNF444
TMEM11
ORMDL3
NPRL2
CYB561D2
FOXA3
SLC35B4
SCAF1
TNFAIP1
IFT20
GFUS
UBQLN4
LAMTOR2
FASTKD1
DSTYK
SNX17
EIF2B4
RPIA
STAU1
SLC4A2
CDK5
ING3
TTC33
TTC13
ARV1
STK25
ABCF2-H2BE1
ABCF2
CCDC146
SCRIB
INTS9
HMBOX1
TIMM21
FBXO15
GATB
ACTR1A
CCP110
C16orf91
ZNF749
COX7C
BOLA1
MED15
JOSD2
NOP14
GRK4
SSBP1
ZNF337
UBR2
CLEC16A
ZFYVE19
DNAJC17
AP2M1
TMEM127
CIAO1
TFEB
MAF1
TMEM59
TCEANC2
WDR87
SIPA1L3
ZNF56
C19orf53
TSC2
NTHL1
WNK1
SIRT2
NFKBIB
UBAC1
PHF13
DESI2
TRAPPC3
ZFYVE28
CFAP99
SMARCAL1
DFFA
VPS50
HEPACAM2
BUB1B
NUF2
FBXW11
MTRNR2L8
KMT2B
RIC8B
ATP5F1D
DCAKD
RPL8
TBL3
NMT1
ZNF189
MRPL50
TFPT
PRPF31
SESN1
ELOC
LRRC29
ING4
DYNC1I2
RPGRIP1L
FTO
IPPK
CCDC90B
FBXO46
SUFU
BUB3
PSMD11
RPS20
MTRNR2L2
RAB5C
ZNF235
SOX6
C11orf58
USP48
ATP5PO
CAPN15
TMEM160
THRAP3
RANGAP1
THYN1
ACAD8
SLC25A19
RAB1A
LETM1
FBXL19
ZNF169
CNIH4
ZNF420
PRRG2
NOSIP
TRAF7
PEX26
OSCAR
NDUFA3
TMEM101
CCAR2
FBXO48
APLF
COPS7B
NUDT13
VIPAS39
AHSA1
CTF1
TRAK2
STRADB
CCDC150
ZNF224
B3GALNT2
CHCHD3
RALBP1
MARS1
ARHGAP9
GPANK1
CSNK2B
CLP1
SNX27
NOTCH2NLC
ZC3H11A
ZNF554
DDX49
COPE
ZNF354A
PTDSS2
NOTCH2NLB
NOTCH2NLA
ZNF350
KAT7
RABAC1
FAM193A
BIRC5
CLDND1
STK17A
RPL18A
FAM185A
LMNB2
PANK3
PDE6D
CTDP1
ZNF384
RBM6
PA2G4
SMUG1
NFXL1
TMEM43
CHCHD4
GPKOW
UFSP2
SEPTIN9
NDUFS2
CDK5RAP2
TMEM102
UTP11
SERPINI1
PDCD10
ZNF230
UBE2Q1
HTRA2
WRNIP1
CCDC174
UCHL5
RO60
ZW10
FAM222A
SF3A3
ZNF37A
NUP153
TBX6
PNPLA6
CNOT4
AKIRIN2
EXOSC4
FAM228B
TMEM245
ZNF133
CNOT1
RPS6KB2
LTA4H
RPS19
BICD2
HBP1
RPS3
UBL7
ZNF527
DUS3L
SLMAP
SDCCAG8
CEP170
ZCCHC4
WBP2
SLC33A1
POLR2E
ZNF226
FDPS
LAMP1
SPHK2
RPL18
NKIRAS1
HSPA13
PIGU
SNRPE
RPS13
MXI1
RALGAPA2
LIN37
PGBD4
EMC7
SEC61A1
PHF23
INO80B
COMMD9
TIMM13
ZBTB45
ZNF2
LUC7L
ZGPAT
ARFRP1
SYPL1
PCM1
PHB2
SCAMP4
ADAT3
SF3B6
CIAO2A
C1orf109
NCLN
CFAP410
QTRT2
CCDC191
TMEM143
PTBP1
METTL26
DGAT1
GUSB
RPP40
ZNF32
ZNF547
TRAPPC2B
MTMR9
SPATC1L
ENOX2
RPL15
TXNDC9
EIF5B
ZNF419
WDR53
FBXO45
NDUFS3
KBTBD4
AHCTF1
CIC
SEC11C
MED27
RPL29
GALK2
CAND1
TTC1
ZCCHC8
ZNF484
PSMD4
RAB29
HEXIM2
THOC6
HCFC1R1
ASXL1
CWC22
EIF2D
SLX1B
SLX1A
BOLA2B
BOLA2
CDK8
TERF2
ZNF343
WAPL
RPL23A
TMEM186
PMM2
AQR
TMEM69
INTS1
RPL37
OPA1
TSACC
CCT3
PRR14
GINS3
GSK3A
ZNF451
ZNF500
USP35
KCTD21
PSMD2
MRPL20
ZBTB7A
RAB30
GPBP1L1
NFKBIL1
ATP6V1G2
UBE2J2
CWC25
NOLC1
MGRN1
CCNL1
MAX
MED11
PSMC4
IGSF8
DDX47
NCBP2AS2
NCBP2
COPS7A
EIF1B
ZMAT5
UQCR10
GID4
ATPAF2
UBA52
PSMF1
LSG1
ILF3
SSR3
CDC25C
METTL3
SSR2
BOD1L1
BOLA2-SMG1P6
ZNF747
ZSCAN32
ZNF174
PEX12
RPS27
TRIP4
ZNF227
ADSS2
VAPA
PES1
RBBP5
SCAMP3
RPS3A
GPR108
THAP1
TMEM222
SYNGR4
KCTD5
WASF1
CDC40
LEMD2
L3MBTL2
USP31
SLC38A9
COPS2
KBTBD8
RPL27
ZNF805
PRKCI
HIRIP3
ZNF17
EXOC4
UTP3
PPP6C
MEN1
GPR137
ZNF862
ZNF773
POLR2J3
MTR
SUPT4H1
CFL1
FAM53C
VPS4B
SUGP1
MAU2
SELENOH
GFM1
ZSWIM9
LIG1
TSN
C12orf43
RNASEH2C
ZNF25
NCDN
KIAA0319L
RETSAT
ELMOD3
TOR2A
ZNF586
NUTF2
CENPT
SASS6
CARS1
ZNF567
RRP15
NDUFB5
MRPL47
CLPP
RACGAP1
ZNF140
CSRNP2
PPP1R13L
POLR1G
DPP9
FBH1
ANKRD16
PRKCSH
CCDC151
PSMB4
B4GALT7
TOR1A
ABRAXAS2
RPL22
SKP2
LMBRD2
ARMH3
ZNF277
DOCK4
PSMD3
EIF3C
TMEM199
POLDIP2
ZNF584
VKORC1
ATP5MF-PTCD1
ATP5MF
EIF3D
SMN2
SMN1
POLRMT
GPT2
EIF3CL
YJU2
ALG10
SERP1
EIF2A
TMEM33
N4BP2L2
TRMT1L
SWT1
AKAP8
XPOT
RTEL1
ZNF684
DHX8
DEDD
CCDC124
ZNF45
VEZT
FGD6
EIF2S2
TUT1
SNAPC3
JRK
CIAO3
KATNB1
CNOT6
MRPS23
TMED9
VRK1
STX18
CXXC1
IPO7
COPS8
ZNF436
DNM1L
RAB3C
TMEM41A
MEA1
ZNF165
PSMB6
ZNF628
AP2B1
INTS4
ESCO2
NUP205
MRPS18C
HELQ
INTS12
GSTCD
ZNF548
MRPS16
ZNF764
GGPS1
ARID4B
IFRD1
ABT1
SKIV2L
NELFE
FRA10AC1
WDR46
PFDN6
DHX33
SF3B2
SFXN5
TOMM22
PUM3
RPL12
LRSAM1
SCYL3
MRPL54
CRK
RAB7A
APH1A
ALKBH8
YIPF2
TIMM29
DARS2
CENPL
MRPL1
BET1
COG2
KRR1
GBA
CAPN10
KHDC4
RBM28
TSNAX
GEMIN6
RFX1
MIA3
FAM168A
ITPR1
KLHL20
IPO13
SNAP47
JMJD4
ZNF585A
ZRANB3
R3HDM1
ZMPSTE24
SNAPIN
EIF3F
BRIX1
USP15
MORF4L1
NOP16
HIGD2A
APBA3
ZNF416
MYBL1
MRPS25
ABCC5
ZNF599
SART1
PPIP5K2
ZNF180
TLE4
DMAC1
TIMM22
DOHH
RAD52
TRUB2
COQ4
CNPY2
DCAF1
DPM3
DNAJC28
RWDD1
RPL34
RUVBL1
NUP107
TRABD
DNAJC14
ACLY
SERBP1
FBXO38
TRUB1
ZNF691
ZNF221
ELP6
SETDB1
OAZ3
UBXN8
TPGS1
MAMSTR
BABAM1
PARK7
WIZ
DNM2
RAD51AP2
LTN1
TATDN3
NSL1
DPH2
MRPL3
UBE2V1
TMEM94
SEL1L
TPRKB
PRPF4
CDC26
PRAF2
SLC39A13
ETFDH
C4orf46
EMSY
ZSCAN5A
SEC13
NUMA1
LRTOMT
ZNF565
ZNF146
TARS2
SH2B1
SH2D6
ZNF776
NR1H3
ACP2
SETMAR
NMNAT1
LZIC
MRPL21
IGHMBP2
CEP57L1
NAA38
CYB5D1
TOGARAM1
KLHL28
DNAJC11
REXO2
TPR
ODR4
NR1H2
MVB12A
CHCHD6
NFKB2
FOXJ3
TMEM258
FEN1
KIF15
KIAA1143
PEX3
ADAT2
NFATC2IP
TUFM
BLOC1S5
WDR24
SMG5
CCDC77
WASHC3
DMAP1
ZC3HC1
TTI2
NOP53
FIS1
ZNF211
SHPK
TLE1
ZNF460
MRPL44
CEP350
ZC3H6
UBE2N
TRMT2A
RANBP1
MPI
MRPL30
MITD1
FLAD1
CTNS
TTLL11
FCSK
H4C12
UBA1
SNRPB2
HSP90B1
HSPH1
METTL18
C1orf112
METTL25
CCDC59
CMPK1
WASHC4
LCORL
COMMD2
ZC3H10
BDP1
SNIP1
MRPS15
RBL2
IPO8
CCDC117
NUP214
STRN
SPC25
ERI3
CDK9
EXO1
CDK19
PSMC3
CD2BP2
SLC39A3
POMZP3
ZNF268
CANT1
XRRA1
TM9SF4
SPCS2
MYL6B
H2AZ2
FAM149B1
ECD
MTIF2
EDEM3
ZNF668
ZNF646
TMEM230
SP2
RCAN1
KANSL1
ZNFX1
RNASEH2A
ACP6
CUEDC2
COPS4
FBXL18
ZNF317
ZNF155
ZDHHC16
EXOSC1
MTERF4
C7orf25
AMD1
SMIM13
CDCA8
DNLZ
VPS45
PPP2R5B
MITF
YWHAG
NELFB
DDX18
NEDD8-MDP1
NEDD8
GMPR2
CDC6
TTC14
NIP7
COG8
NARS1
ZNF302
GTF2H2
GALM
ADPRS
ABLIM2
ZNF721
PIGG
ZNF417
PDE4DIP
SHLD1
PPP1R11
PUS3
DDX25
AKT1S1
TEPSIN
NDUFAF8
TOE1
MUTYH
HIBADH
SLC25A44
HSCB
CHEK2
SLC37A3
GTF2H2C_2
GTF2H2C
ZNF286A
SUCLG1
ZNF408
ARHGAP1
ATE1
SSNA1
ANAPC2
C8orf76
RRS1
UBE4A
SLC30A6
BRF2
ZNF304
CLINT1
PCNX3
NCOA3
TBC1D17
PKNOX1
ALKBH3
TMEM109
MRTO4
EMC1
AHCY
CBR4
GET4
PPP1R7
PASK
WDTC1
SP4
CTNNBL1
NR6A1
MRPS33
JTB
DPM2
HEXIM1
NUCB1
LONP1
CATSPERD
DAZAP1
MRPL16