ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5501657 | A-375
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◣ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

WDR74
STX5
GSTA4
H4C14
H3C15
H3C14
H2AC19
H2AC18
EAPP
TMEM107
COL23A1
H4C15
MAMDC2
GBA
NUF2
FRA10AC1
DSTYK
TAF12
MTRNR2L1
MTRNR2L8
SF3A3
PHC2
DUX4
MRPL21
IGHMBP2
RBBP5
STX16
INTS5
GANAB
POLDIP3
EIF2D
KIF5C
PTPN6
C12orf57
SNAP47
JMJD4
SELENOH
NR1H3
ACP2
H2BC21
H2AC21
H2AC20
S100A2
CRTC1
MPZL1
INTS12
GSTCD
FAM227B
DTWD1
PARP16
SAR1B
DRG2
SSBP1
UCKL1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
S100A14
S100A16
TARS2
H4C8
ARL4D
NDUFC2-KCTD14
NDUFC2
TATDN3
NSL1
HMGB1
USPL1
SMG8
NDUFS3
KBTBD4
FAM180B
TRIP4
PCLAF
ZBTB45
SLC27A5
PYGB
FXYD3
NMNAT1
LZIC
DCP1A
MTRNR2L2
MSH3
DHFR
CCNL1
RPL37
CARD6
RPS7
SLC44A1
RAD54L2
H4C12
H4C11
H2BC14
H2AC14
EIF1AD
CST6
BANF1
GARS1
NPAS4
YARS1
S100PBP
H4C6
H3C6
H1-3
CCDC88A
NME1
MRPS18C
HELQ
TBC1D19
ZNFX1
DPY19L4
LRRC37A3
PSMF1
MRPS23
LMNA
ZNF207
C17orf75
SIRT4
DMAP1
LAMP1
H2BC5
H1-4
MTERF4
PCID2
CUL4A
STAT3
SIT1
CCDC107
ARHGEF39
METTL9
PARD6B
RUVBL1
COL16A1
NOC4L
DDX51
H2BC15
H2AC15
UQCC1
GTF2H2C_2
GTF2H2C
SEC13
MRPL40
HIRA
ERCC6L2
TNFAIP8L2-SCNM1
TNFAIP8L2
TMOD4
SCNM1
LYSMD1
AAR2
KLHL20
MGAT5B
ETV4
RPS6
JRK
KIF2C
H1-2
PTPRN2
POLR3E
MTF2
H3C3
H2BC3
ARTN
PRRG2
NOSIP
TMEM262
RGPD2
RGPD1
STOML2
PIGO
FAM214B
STAT1
TAF1D
C11orf54
PDE4DIP
AURKAIP1
KMT2C
TUBGCP3
CT45A10
MPHOSPH10
MCEE
SRSF4
SMARCD2
WDR24
STUB1
JMJD8
CDKN2AIPNL
PSMD9
HPD
PPIP5K2
ARL8B
TSFM
TRIM48
LRRC59
TEX9
RFX7
MAT2A
RASA3
DDIT4
H4C9
H2BC11
H2AC11
NFE2L2
SYT7
CALHM1
STX18
DUS1L
CLUH
FAM187A
EFTUD2
CCDC103
H3C13
H2BC18
VPS28
GFAP
TVP23B
NUP54
MUC3A
WDR31
BSPRY
C12orf65
MRPL1
TTC4
PSMD6
SNAI1
ELAVL3
TBL3
RPS2
RNF151
NOXO1
G6PC3
LSM12
GEMIN7
ZNF296
KMT2E
TTLL11
DNAJC25-GNG10
DNAJC25
JUNB
BNIP1
TSC2
NTHL1
ADPRHL1
DDX19A
RPLP1
FCGR3A
STAG1
MLEC
SNX24
ZC3H10
RPL41
POLG
REXO4
ADAMTS13
RANBP2
DHRS3
GTF2H2
DDX1
LDAH
ALG10B
LAMTOR5
RARA
TMED2
PTPRH
NUP153
COMMD2
SRSF7
AQR
FAM98B
GRAMD1C
SDHAF3
TEFM
ATP5MC2
SPRYD4
ADNP
PMPCA
ENTR1
ISLR
RPS5
POLD1
NR1H2
MRPS31
H3-2
ST3GAL2
SNRPE
COMMD1
CCT4
CLCN7
NT5C
MRPL34
DDA1
ABHD8
MORF4L1
USP30
DCAF10
PTGES2
STN1
RPS20
SCAND1
WBP1
INO80B
F2RL1
RPS19
GFM2
FZD1
PHLDA1
PPRC1
GINS3
RPL27
IFI35
TEKT2
ADPRS
GTF3C3
C2orf66
FAM133B
ERCC1
NSUN4
BANP
SNRPB
KNL1
EMC3
MRPL20
CCNL2
RAB5IF
VIM
KCNMA1
RCAN1
SNRNP70
CZIB
ABCC3
ZNF749
RPL12
LRSAM1
TIMM22
TACO1
NFX1
ID1
PYROXD2
PHF12
RPL29
NOL11
ZNF358
MCOLN1
ZNF398
ZNF425
ATXN2L
ADAR
MRPS2
C9orf116
MAPKBP1
ITPKC
COQ8B
TEX46
KDM1A
TMEM101
PRPF4
CDC26
TTI2
VPS72
PIP5K1A
CBX5
HNRNPA1
VIRMA
H2BC12
H2AC12
ACYP2
TOR1A
BRF2
WDR36
BAX
PRRT2
MAZ
C8orf37
S1PR2
CCAR2
C8orf58
RPL26L1
TOB2
MRPL58
NPR1
ILF2
OMA1
DAB1
CKAP2
VPS36
GPRC5A
PAFAH2
HEXIM2
RPTOR
ZNF3
COPS6
H4C2
H4C1
H3C2
H2AC4
H3C1
H1-1
UCHL5
RO60
SAMD1
MISP3
C19orf67
KCTD5
RRP15
PSMC2
DNAJC2
RPS15A
MAPK1IP1L
TDG
C12orf73
EPHB4
MRPS14
TRMT61B
SFPQ
TRPM7
WSB2
RPS3A
TMEM222
H4C3
H1-6
RIN1
BRMS1
UBL7
SLC33A1
PHB2
POLR2J
TOMM7
EMC4
OTUD7B
DNAJB4
FAM207A
C8orf33
COX16
PLEKHB1
DHX35
ZNF609
RPL22
RNF207
MTIF2
MRPS35
PPP4R2
TESC
P2RY11
YIPF2
TIMM29
BMS1
MRPL55
BCL3
EIF3G
ARL6IP1
MYL5
ATP5ME
PAQR5
PDE6A
CIAO3
ZC3H6
MED18
ZER1
INO80C
FURIN
TMA16
PNPT1
MED4
HSPA6
ESCO1
METTL25
CCDC59
PURB
CCNT1
CCDC15
RBM39
SLC39A4
CPSF1
ZFAND2A
CLUAP1
C16orf90
FCHSD2
SLX1B
SLX1A
BOLA2B
BOLA2
SULT1A4
SULT1A3
ILF3
CORO1A
TRIM41
GTF3C5
FBN3
TBC1D13
ITGB3BP
EFCAB7
UQCC3
LBHD1
CSKMT
C11orf98
GSN
MAF1
CYC1
WDR97
TMEM167B
CTNNB1
LIG4
ABHD13
AARS2
PPP1R14B
LOC114841035
FKBP2
GATD3B
GATD3A
PLCB3
BCAR1
IDH3B
FBXO28
RRAD
CIAO2B
CES2
TMEM39B
GPN1
CCDC121
PRDX1
FAM228B
TP53I3
SF3B6
UBA52
CD2BP2
CDK5RAP1
DUS2
DPEP2NB
DDX28
SLC9A1
VMAC
NDUFA11
FAF2
DGKD
CAPS
TRAF7
RAB26
NDUFS7
TSNAX
MIA3
ALDOA
H3C10
H2BC13
H2AC13
RASA1
MAP2K3
TMEM238
TMEM190
RPL28
EIF2B5
ZNF581
ZNF580
RPL5
TMEM250
SAAL1
H2BC4
H2AC6
SRGAP2C
SRGAP2B
ANGPTL4
RPS3
CALM2
PHLDB2
MRI1
C19orf53
TOR2A
ZMPSTE24
SNRPD1
NBPF1
HROB
H4C7
H3C7
YWHAE
RPGR
S100A10
HSD17B12
UTP3
PRR5L
COMMD9
BOD1L1
PPP1R11
POLR1H
RNF39
AP5S1
DRAP1
C11orf68
MAN2C1
SOS1
EFCAB2
TAF5
FAM200B
SYT8
ZNF513
SNX17
EIF2B4
ZC3HC1
TBPL1
SYT5
POLR3B
DCAF8
TPD52L2
ABHD16B
ADAM22
PARP6
ATAD2B
NTSR1
MALL
PUM3
SNRPB2
WDR70
NUP155
MTOR
TRIB1
BIRC2
NANOS3
RRP9
PARP3
RAB11A
BHLHE40
ARID1A
BICD1
SEMA3B
SH3TC2
LSMEM2
MDM4
HEXA
TMEM259
CNN2
SMG7
CAAP1
FRMD4A
TCF7L2
RIPOR3
CCDC200
MTR
SUPT5H
RPS16
NFKB2
LRWD1
ALKBH4
RBSN
MTMR11
SF3B4
MRPL27
EME1
YTHDF1
C11orf49
INPP4B
MBNL2
NARS1
WDTC1
ATF6
MACC1
UBE2H
YTHDF2
TCF12
CRB1
SHMT1
CORO2B
PANK4
HES5
DOHH
POLR2J3
FZR1
EPRS1
H3C4
GTF2B
H2AC7
PRSS22
H4C5
H2BC7
FOSL1
UBA2
PRRT3
ITGB3
SIRPD
PCM1
RAB13
RPS27
SNX19
SNF8
NDUFA12
TBL1X
BCAT2
H2BC17
H2AC17
NBPF15
TNFRSF10B
H3C12
HPCAL1
CSRP1
PSCA
OSCAR
NDUFA3
SPHK2
RPL18
FAM83E
SART1
DIAPH1
AP1G1
HEATR1
MBTPS2
SACM1L
ZBTB40
C5orf15
USE1
NACA
NAA20
TMEM183A
TPCN1
IQCD
PLIN3
DUSP7
PARP2
R3HDM2
INHBC
TAF6
MBLAC1
CNPY4
TTC33
CALR
FARSA
DPP9
DHX8
CNPY2
NUP107
EIF2B3
THEM4
PPP6R1
FAM3C
SYCE2
TAOK3
SUDS3
CPT2
IQSEC3
CRTAM
FAM53C
CDC25C
ZNF286A
H2AX
DPAGT1
SRCAP
LOC730183
RPS24
POLR3A
RBM45
PDE11A
TTC17
CDC73
HOOK2
NOP56
HMBS
NUCKS1
SLC20A1
INPP5F
NID1
MRPL24
BTRC
GALK2
COPS2
NDUFAF5
ESF1
TBC1D23
ASB6
PBRM1
GNL3
BUD13
ACBD3
SRA1
SLC35A4
APBB3
LCMT2
ADAL
EIF4EBP3
SSH1
MRPL30
MITD1
STYXL1
GOLGA1
MDH2
MLLT11
CHD1
NUP133
PRKAR1B
DGUOK
IREB2
NCOA7
CDC42SE1
CALR3
C19orf44
ZCCHC4
RNASEH2C
KAT5
COPS7A
RBM28
SLC39A3
TSSK6
NDUFA13
SRFBP1
C16orf86
PARD6A
ACD
RFXANK
BORCS8-MEF2B
BORCS8
TAS1R1
NOL9
PCIF1
TGDS
GPR180
BLOC1S6
DNAJB1
TECR
TOR1AIP2
TOR1AIP1
TSN
INTS4
ZNF696
ACBD5
MRPL42
ZCWPW2
AZI2
STX4
EXOC7
POU2F1
ENO1
PDS5B
ASIC3
PSMD3
PARK7
ARID3B
ARHGAP19
RPL26
KRBA2
EXOSC6
NCOA5
TNFRSF1A
QTRT1
FLOT2
DHRS13
DCLRE1B
AP4B1
WWTR1
SLC27A1
FCRLA
PCARE
USF1
TSTD1
IQCH
AAGAB
MAGOH
H4C4
H2BC6
ZSCAN30
OCIAD1
AVPI1
TIMP3
UNK
H3-3B
LRRC29
SMN2
SMN1
OAZ3
LARS2
PSMA1
SECISBP2L
ETV3
UBE2D3
ROM1
EML3
B3GAT3
ORC5
CISD2
SETDB1
C8orf76
MZF1
GATAD2B
TRIAP1
COX6A1
H3C8
H2BC10
CDK12
MED1
THOC5
RPL6
PTPN11
WDR11
NOL7
NDUFAF3
IMPDH2
DALRD3
BIN3
ETS1
KIF21B
AMOTL1
PKMYT1
NAA80
IFRD2
HYAL3
RAD52
DNAJC11
HEXIM1
MAP1LC3B
FBXO31
TAMM41
TPK1
SQSTM1
KLF9
B4GALNT3
AMACR
CEP135
YAE1
RPS13
MRPL44
ESYT1
ZNF721
PIGG
SLC30A6
TBRG4
BORCS7
FBXW2
C1orf74
RNF166
CTU2
ADGRG1
PKM
IRF2BP2
HSPA8
ABHD10
LY6E
CD22
GTF2H3
EIF2B1
RPS28
NDUFA7
MSL2
DUSP12
TRIM65
MRPL38
SEC11A
COMMD4
ACTN1
MFSD12
HMG20B
METRNL
ANKRD35
OPA1
NCBP3
HSPA9
PHAX
ALDH7A1
MRPL33
NOL12
NUP42
TEDC1
INKA2
SMIM10L1
PRH1-TAS2R14
PRH1
SH2B3
ZC3H4
MTAP
LGALS1
IL37
ODF3L2
MADCAM1
ING4
PTBP1
TTC1
NSFL1C
SLC3A2
PRMT5
GPR25
CLDN4
PEX12
AP2B1
TMEM79
SMG5
UTP25
CBWD5
CBWD3
PGP
PINX1
E4F1
KLHL12
MTMR2
TGFA
SCNN1A
LTBR
TMEM11
SSNA1
ANAPC2
TMEM248
SLC35E2B
ARHGEF12
POLR2M
STMP1
MRM3
GLOD4
MUL1