ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535454 | A-375
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◣ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

WDR74
STX5
DUX4
EAPP
GSTA4
MAMDC2
COL23A1
FRA10AC1
STX16
MTRNR2L2
MSH3
DHFR
KIF5C
SEMA6A
LIMK1
PHC2
FAM98B
MTRNR2L8
DRG2
DCAF10
TATDN3
NSL1
SMARCD2
MTRNR2L1
GBA
EXD1
CHP1
HPCAL1
ZNF207
C17orf75
FAM227B
DTWD1
H4C14
H3C15
H3C14
H2AC19
H2AC18
ADAMTS9
IER3
FLOT1
STX18
TPT1
CDK5RAP1
WDR36
IST1
TRPV2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
SLC5A3
MRPS6
RGPD2
RGPD1
MAN2C1
RAD54L2
TACO1
NUF2
PCID2
CUL4A
BNIP1
DCP1A
ANKRD40
DPY19L4
TRIP4
PCLAF
ZC3HC1
DSTYK
NME1
MTF2
LRRC37A3
INTS12
GSTCD
INPP5F
TMEM242
TAF12
STX3
WDR31
BSPRY
H2BC21
H2AC21
H2AC20
COMMD2
AURKAIP1
RBBP5
H4C15
FCGR2A
SAR1B
SLC24A1
TMEM256
NLGN2
TPRKB
STAT6
SIRT4
H4C12
H4C11
H2BC14
H2AC14
EIF2D
ANP32E
NKIRAS1
RPL15
TTC4
SF3A3
SLC25A51
SLC9A1
LRATD2
CTNNB1
PLEKHM3
NFE2L2
TEFM
NDUFS3
KBTBD4
FAM180B
H2BC15
H2AC15
TEX46
KDM1A
NDUFC2-KCTD14
NDUFC2
PSMD1
PDE4DIP
H4C3
H1-6
ERCC1
NDUFS7
RAB13
RPS27
GTF2H2
MTBP
MRPL13
ACOT7
KANK1
SIT1
ACBD6
ATXN7L2
CYB561D1
CCDC107
ARHGEF39
SPRY4
SLC20A1
PEX3
ADAT2
TTC26
H3C13
H2BC18
PHLDA1
TOMM5
LAMP1
ZMPSTE24
S100A5
S100A4
S100A6
SERPINE2
HMGB1
USPL1
TMEM107
DMAP1
RPS6KA1
HEXIM2
VPS45
MRPL40
HIRA
ASB6
NMNAT1
LZIC
SMG8
PIGC
C1orf105
DDIT4
ZNF827
LSM5
AVL9
RBM28
PIGL
NCOR1
WWOX
AMOTL1
TARS2
POLR3B
XPA
TOR1AIP2
TOR1AIP1
RASSF5
RPS6
PTPRH
WDR70
NUP155
BHLHE40
FRG2C
RPL37
CARD6
ID1
NR1H3
ACP2
TUBGCP3
ANAPC5
NPM1
CCNL1
JUNB
DRAP1
C11orf68
ADNP
ZBTB45
SLC27A5
JRK
RPL3
BTF3
FXYD3
RRP15
ALKBH3
TMEM238
TMEM190
RPL28
ZER1
SRGAP2C
SRGAP2B
RPS5
USP30
WNK4
VPS25
CBX5
HNRNPA1
MRPL39
DTX2
PARP16
E2F6
FBXW11
OPA1
ZNF609
FAM228B
SNRPE
TP53I3
SF3B6
DNAJC25-GNG10
DNAJC25
CT45A10
KCTD5
COX16
LDAH
H4C9
H2BC11
H2AC11
GRAMD1C
KCNMA1
TFAP2B
RPL9
LIAS
SELENOH
LIG4
ABHD13
AARSD1
SNTB1
EEF1A1
NUFIP2
SLC35A3
PDE8A
NFATC2IP
SSBP2
PROB1
SAAL1
SPATA24
GFOD2
B3GNT7
P2RY11
EIF3G
RCOR3
SOD2
WTAP
ARL14EP
POLR2C
RFXANK
BORCS8-MEF2B
BORCS8
BTG1
ZNFX1
NOTCH2
DR1
PRKCE
FEM1B
ZNF460
BCL3
G3BP1
ITGB3BP
EFCAB7
SS18
MRPS23
MTERF4
RPS27A
CLHC1
MBTPS2
SLC6A15
RPS3
MTOR
TEX9
RFX7
S100A2
RPS20
NSUN4
PTCD1
CPSF4
OTUD7B
NR4A1
ACY1
ABHD14B
ABHD14A-ACY1
ABHD14A
CLTC
FCRLB
RICTOR
SOX5
SSBP1
TMCO2
SNRPB2
RPS9
TSEN34
ABHD12
RPL11
DUSP7
NNMT
MRPL21
IGHMBP2
PLXNA1
COQ8A
SNRNP70
TUBB3
MC1R
BFSP1
PPP6R1
ERCC6L2
MPG
RHBDF1
ZSCAN30
MTMR2
SLC44A1
CGGBP1
ATP5MC2
ACBD3
C3orf38
GTF3C6
KCTD3
MRPL1
NCSTN
COPA
H4C6
H3C6
H1-3
AGMO
CT45A7
SAGE1
MRPL24
CDKN2AIPNL
RBM45
PDE11A
H3-2
CCDC200
FRG2
PTPN6
C12orf57
R3HDM2
INHBC
LOXL4
CDCA4
UCHL5
RO60
BCL9
H3C10
H2BC13
H2AC13
MTAP
PYROXD2
BOD1L1
POLDIP3
DNAJC14
SECISBP2L
TYRO3
STAT3
NDUFA9
AKAP3
SH2B3
PDZD9
MOSMO
PSCA
SLC1A4
ZNF76
STARD13
SERPINA3
PGBD2
PTPRG
SEC13
KIF22
UCN2
PFKFB4
MIS12
DERL2
TOMM20
ADGRL1
LOC100509620
WDR11
C16orf89
ALG1
POLR3F
DZANK1
WWTR1
CSRP1
MOGS
MRPL53
MRPL48
QSOX1
H2BC5
H1-4
SQSTM1
RPL32
NAA80
IFRD2
HYAL3
CDCA3
UCKL1
TNFAIP8L2-SCNM1
TNFAIP8L2
TMOD4
SCNM1
LYSMD1
TMEM115
NPRL2
CYB561D2
GPBAR1
CALR3
C19orf44
PHB
TCEA2
TESK2
MMACHC
SMPD3
CLPB
BOD1
HDGF
FEM1A
PNKD
AAMP
ST3GAL2
GSPT1
AP2S1
PAFAH2
ARHGAP35
SLC39A1
CREB3L4
CHMP4B
NUDCD1
CRTC2
TSNAXIP1
RANBP10
LOC102724770
DGCR6
BTRC
TMTC3
CEP290
PPRC1
KBTBD6
PANK4
HES5
PEMT
AHCYL2
RPL36
MICOS13
HSD11B1L
KBTBD7
PRCC
DDX23
PPP1R12C
UNK
H3-3B
C1orf159
LARS1
UBE2T
PPP1R12B
CTU1
INVS
ERP44
ZFYVE1
PHF12
VCPIP1
C8orf44-SGK3
ZNF225
VARS2
GTF2H4
NTAN1
RASSF1
TSSC4
MAD2L1BP
GTPBP2
ZMYND10
BANP
CHPF2
ABCF2-H2BE1
ABCF2
SYMPK
FOXA3
ZNF444
TMEM11
ORMDL3
GSDMB
TNFAIP1
IFT20
SLC35B4
PYCR3
GFUS
SCAF1
RRAS
FASTKD1
UBQLN4
RAB25
LAMTOR2
ZNF513
SNX17
EIF2B4
SEPTIN9
RPIA
ASIC3
STAU1
WDPCP
MDH1
INTS9
HMBOX1
SLC4A2
CDK5
ING3
TTC33
TTC13
ARV1
STK25
SUFU
ACTR1A
CCDC146
ZFYVE28
CFAP99
SCRIB
ZSCAN22
GDE1
CCP110
TLE3
UNKL
TIMM21
FBXO15
GATB
EMILIN1
C16orf91
ZNF749
KHK
OST4
WNK1
COX7C
MED15
SV2A
BOLA1
JOSD2
ASPDH
NOP14
GRK4
TBL3
RPS2
RNF151
UBR2
ZNF337
TMEM127
CIAO1
DEXI
CLEC16A
ZFYVE19
DNAJC17
AP2M1
MAF1
CYC1
ODF3L2
MADCAM1
TFEB
WDR97
TMEM59
TCEANC2
WDR87
SIPA1L3
ZNF56
MRI1
C19orf53
PEX14
TSC2
NTHL1
MIDN
ATP5F1D
SIRT2
NFKBIB
DFFA
UBAC1
PHF13
DESI2
TRAPPC3
MAP7D1
CTF1
BCL7C
RPS7
SMARCAL1
VPS50
HEPACAM2
BUB1B
KMT2B
TMEM70
ELOC
RIC8B
CBARP
NMT1
DCAKD
ZNF517
ZNF34
RPL8
FBXO46
NOXO1
ZNF189
MRPL50
TFPT
PRPF31
SESN1
LRRC29
ING4
DYNC1I2
RPGRIP1L
FTO
IPPK
CCDC90B
MEIOSIN
BUB3
HMX2
PERCC1
PSMD11
EMP3
CCDC114
RAB5C
ZNF235
SOX6
C11orf58
NDUFS2
ADAMTS4
PRRG2
NOSIP
USP48
ATP5PO
CAPN15
SLC25A19
TMEM160
THRAP3
RANGAP1
THYN1
ACAD8
RAB1A
LETM1
FBXL19
ZNF169
CNIH4
ZNF420
TRAF7
RAB26
PEX26
OSCAR
NDUFA3
TMEM101
CCAR2
C8orf58
FBXO48
APLF
PDE6D
COPS7B
NUDT13
LMNB2
VIPAS39
AHSA1
TRAK2
STRADB
ARL4D
CCDC150
ZNF224
CLP1
B3GALNT2
RBL1
ARHGAP9
CHCHD3
RALBP1
MARS1
LY6G5B
GPANK1
CSNK2B
C6orf47
APOM
YPEL4
RPL18A
TTBK1
SNX27
MED23
ZC3H11A
ZBED6
ZNF554
DDX49
COPE
ZNF354A
PTDSS2
ANO9
RABAC1
MON1A
ZNF350
KAT7
TMEM102
FGF11
CHRNB1
MYLK4
STK17A
WBP1
INO80B
FAM193A
SPEM3
BIRC5
GPR15
CLDND1
FAM185A
PANK3
CTDP1
ZNF384
RBM6
GPKOW
PA2G4
SMUG1
NFXL1
TMEM43
CHCHD4
UFSP2
C4orf47
CDK5RAP2
YPEL3
TBX6
UTP11
FHL3
SERPINI1
PDCD10
ZNF230
SPEM2
UBE2Q1
CHRNB2
HTRA2
DQX1
FAM222A
WRNIP1
CCDC174
SCAMP4
ADAT3
ZW10
CLDN25
BICD2
RPS6KB2
ZNF37A
NUP153
CALR
PNPLA6
CNOT4
SDCCAG8
CEP170
PTPRCAP
AKIRIN2
UTP3
TMEM245
GPAA1
EXOSC4
LTA4H
ZNF133
CNOT1
RPS19
POLR2E
ZNF718
HBP1
UBL7
ZNF527
PRR22
DUS3L
GPX4
GABARAP
ZNF227
SLMAP
ZCCHC4
ZNF595
RTN2
LIN37
PHF23
DVL2
WBP2
SLC33A1
INTS1
PROSER3
HSPB6
SAMD1
MISP3
C19orf67
MRPL20
CCNL2
ZNF226
PKLR
FDPS
SNX1
CIAO2A
SPHK2
RPL18
FAM83E
HSPA13
PCM1
SYPL1
PIGU
NFKBIL1
DDX39B
ATP6V1G2
NOP53
PSENEN
IGFLR1
RPS13
MXI1
RALGAPA2
RPS26
NEK8
PRR5L
PGBD4
EMC7
SEC61A1
ZGPAT
ARFRP1
COMMD9
TIMM13
PHB2
ZNF514
ZNF2
LUC7L
FAM234A
SLX1B
SLX1A
BOLA2B
BOLA2
ZNF484
CDCA8
C1orf109
PIH1D1
ALDH16A1
S1PR4
NCLN
CFAP410
QTRT2
CCDC191
MCRIP2
TMEM143
SYNGR4
METTL26
PTBP1
WFIKKN1
LRFN3
SCRT1
DGAT1
GUSB
RPP40
ZNF32
PRR14
FBRS
ZNF547
TRAPPC2B
MTMR9
SPATC1L
WDR53
FBXO45
TPGS1
ZNF419
ENOX2
CLDN6
TXNDC9
EIF5B
ZNF772
AHCTF1
UBALD1
MGRN1
CIC
SEC11C
MED27
TNFRSF12A
THOC6
HCFC1R1
RPL29
GALK2
CAND1
ZNF500
TTC1
SLC17A7
ZCCHC8
GSK3A
PSMD4
PES1
RAB29
FAM207A
SULT1A4
SULT1A3
ASXL1
CWC22
DNM1L
FARSA
TMEM69
GPBP1L1
PEX12
AP2B1
RNASEH2C
KAT5
RPL23A
GINS3
CDK8
TLCD1
TERF2
ZNF343
RAB34
PROCA1
WAPL
FAM166A
TMEM186
PMM2
AQR
RCAN1
ZMYND15
MED11
CXCL16
TMED9
B4GALT7
ZBTB7A
TSACC
CCT3
DBP
ZNF451
USP35
KCTD21
PSMD2
RAB30
IGSF8
UBE2J2
SCNN1D
CWC25
NOLC1
MAX
STPG3
CA11
CAPG
NCBP2AS2
NCBP2
PPP6C
PSMC4
DDX47
GPR108
COPS7A
EIF1B
ZMAT5
UQCR10
GID4
ATPAF2
TMEM262
BOLA2-SMG1P6
UBA52
ZNF768
ZNF747
PSMF1
ALG10B
VAPA
LSG1
ILF3
SSR3
ADSS2
FAM53C
CDC25C
METTL3
SSR2
KANSL1
ZSCAN32
ZNF174
EML6
DOHH
PARL
MUS81
CFL1
SCAMP3
FAM189B
SLC38A9
THAP11
CATSPERE
HPS6
ARMH3
RPS3A
TRIP10
SHC1
THAP1
TMEM222
WASF1
L3MBTL2
CDC40
LEMD2
USP31
KBTBD8
COPS2