ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX1637470 | MOLT-4
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◣ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

CDCA3
HHIP
WDR74
PRCC
BTRC
TSNAXIP1
RANBP10
TCEA2
AP2S1
TMEM115
MMACHC
PKIG
CHMP4B
IFRD2
NUDCD1
FEM1A
KBTBD7
PHF12
TMEM11
PHB
GTF2H4
SMPD3
CLPB
AHCYL2
ALDH1A2
GSPT1
CALR
MRPL24
SCNM1
LYSMD1
ST3GAL2
CALR3
C19orf44
BANP
ATP2C1
ZNF595
WDPCP
MDH1
KANSL1
KBTBD6
STAU2
CXCR4
NPRL2
CYB561D2
PI16
RBL1
C3orf86
INTS9
HMBOX1
VCPIP1
C8orf44-SGK3
C1orf159
PEMT
SLC4A2
CDK5
ZFYVE1
CRTC2
MICOS13
HSD11B1L
ZNF444
IQGAP2
DEGS1
BOD1
PPRC1
KMT2B
CHCHD2
SHQ1
ING3
INVS
ERP44
SCAF1
LZTFL1
H2AZ2
PNKD
AAMP
PANK4
PPP1R16B
TMTC3
CEP290
PAFAH2
NEIL3
DCLK3
GTPBP2
MAD2L1BP
ZNF331
VPS50
HEPACAM2
MND1
DDX23
LST1
GSK3A
TLR9
FXYD2
PPP1R12C
CD1A
LAIR1
UNK
ABCF2-H2BE1
ABCF2
RAB37
KRTAP16-1
BNIP3L
ZNF225
AP2M1
EPHX2
UBR2
CTU1
REPIN1
ACTR1A
SUFU
DCAKD
NMT1
DSTYK
GATB
MSL2
FBXO48
APLF
VIPAS39
AHSA1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
FBXL19
C12orf57
FAM222A
GFUS
CCDC146
ZNF335
CCM2
WNK1
SLC35B4
ZNF337
ZNF821
TLR6
BIRC5
TSSC4
STAU1
TIMM21
FBXO15
KCTD9
CDCA2
TNFAIP1
IFT20
LDLRAD4
CCDC114
LAT
RPGRIP1L
FTO
HSPA13
PSMF1
MAP1LC3B2
NTAN1
ITGA4
RIC8B
STK25
MKRN3
GZMA
DFFA
PPP1R12B
POLDIP3
PRPF40B
TGM6
ELOC
LARS1
RGL4
TFEB
NBEAL2
STAP1
BICD2
FAM193A
H6PD
NUF2
TMEM101
TTI2
CAPN15
MRPL1
ARHGEF3
SLC47A1
FASTKD1
FBXW11
PTK2
ZFYVE19
DNAJC17
CCP110
JOSD2
CCNG2
NME1
THYN1
ACAD8
BORCS7
SYMPK
FOXA3
TFPT
PRPF31
RPS26
ZBTB45
UBQLN4
LAMTOR2
DHX33
TNFRSF4
CCAR2
SSBP1
HECTD1
PHF13
N4BP2L2
PLK1
NET1
TMC8
ARHGAP24
PEX26
ZNF500
RPIA
DESI2
RPL29
ATAD2
DUS3L
ZGPAT
ARFRP1
MED23
UTP3
ZNF165
RFX8
ZNF354A
MX2
SOX6
C11orf58
ZNF133
RHCG
FAM185A
FBXO46
NCLN
FAM168A
TMEM258
FEN1
SNX17
EIF2B4
ICAM2
NUCB2
EPHA1
PRRG2
NOSIP
MFAP4
OR10T2
ZNF56
RANGAP1
COPS4
DNAJB4
CDK8
WDR87
SIPA1L3
TES
ATXN7
MED15
MEN1
IPO4
RETNLB
COX7C
MAMSTR
ZNF354B
LCK
DYNC1I2
MBNL1
LYST
DBNDD1
ORMDL3
TMEM245
NSFL1C
RTTN
CCDC90B
SLC33A1
RNASEH2C
SIRT4
RALGAPA2
DLC1
CHCHD3
ZFYVE28
CFAP99
SMO
ADORA2A
FIGNL2
BRF2
FAM228B
WBP2
SF3B6
STX18
TRAF3IP3
NUDT13
EIF3F
CDK5RAP1
ZNF749
ZNF226
TRAPPC3
RAB1A
CLIC1
SUPT4H1
ZNF408
ARHGAP1
TAF3
DCP1A
TTC13
ARV1
TMEM59
TCEANC2
CIAO2A
CLEC16A
UBC
AURKAIP1
TRIP4
GALK2
COPS2
NDUFB3
FAM126B
TTC33
BUB1B
WDR24
SVIP
TLE4
ZSCAN22
TBC1D31
C19orf53
RTEL1
PANK3
USP48
ASNS
MRPS18C
HELQ
AAR2
MYO1G
GSTA4
TRAT1
TSC1
GFI1B
CFAP20
TCF3
CALM2
AQP3
SNRPD3
GUCD1
GPANK1
CSNK2B
RABAC1
IDNK
SELENOH
CCNI
PIGU
ZW10
SNRPB
ZMAT5
UQCR10
TNPO3
ASXL1
SF3A3
TMEM102
TRAF7
USP30
ZNF101
HDAC9
TOR1AIP1
RPL18A
PHF23
TUT1
MAF1
YIPF2
TIMM29
MTMR9
SMARCAL1
NUTF2
CENPT
RACGAP1
ATP2A3
GPKOW
SUGP1
MAU2
PSMD11
MCM7
AP4M1
KAT7
NOP14
GRK4
ZNF140
PEX3
ADAT2
KRR1
PTDSS2
LAX1
HEMGN
MTF2
TMEM229B
ETFDH
C4orf46
COX16
CLDND1
TMEM127
CIAO1
SIRT2
NFKBIB
KCTD5
PPIP5K2
RBM6
SMARCA2
SCRIB
UBAC1
ARHGDIB
ADARB1
PTCRA
HEXIM2
THRAP3
ZNF354C
SLA
PEAK1
HMG20A
GTPBP3
ZSWIM8
HEXIM1
GRAP2
MYLK4
SLC26A11
TACO1
SSH2
TMEM160
REXO4
ZNF169
ZNF527
C16orf91
ZSWIM9
LIG1
ABCB8
GRHL3
RPS7
NDUFS3
KBTBD4
RBBP5
ANTKMT
AQR
YJU2
MED18
DOCK10
ZNF235
GFM2
RBM28
MRPL44
ZNF224
FDPS
VKORC1
CCDC150
ARHGAP4
BUB3
WBP1L
PRDM1
CTHRC1
CD3E
OR10P1
RPS20
ALG10
CD28
MTBP
MRPL13
DIABLO
UBE3B
KCTD10
PPP5D1
CALM3
GTSE1
SLC32A1
RPL23A
AOAH
KIF20A
BRD8
ATP5F1D
ZNF343
OSCAR
NDUFA3
ESCO2
PA2G4
PLAAT5
NUCB1
ANKRD40
H4C3
SERPINI1
PDCD10
TARBP2
VPREB1
ARMH3
WDR46
PFDN6
SNAPC3
DHX8
DEF6
KDM3A
UMODL1
VRK1
NOP16
HIGD2A
ZNF276
MARS1
ARHGAP9
TCF7
SMG8
TRAK2
STRADB
RPS13
MRPS31
MAP3K7CL
CASS4
ASIP
METTL11B
RUVBL1
CCDC88A
RPP40
GOLGA3
TMEM123
UHRF2
FAM8A1
MTERF4
PPP2R5B
NFKBIZ
CUEDC1
AHCY
PUS10
PEX13
RUFY3
SLC25A19
SOD2
WTAP
TOMM40
PTPN22
SDCCAG8
CEP170
TMEM222
TUBGCP3
BPI
CIC
WRNIP1
UTRN
CFAP410
GPR137
CCDC200
APOBR
TBX6
NIBAN3
DNAJC2
LIN37
SERBP1
ALKBH3
ADGRE2
SLC7A8
SDE2
MTRF1
DGAT1
PRKCI
PPFIBP2
CFL1
MRPS16
MEF2C
SIRT6
ANKRD24
TOE1
MUTYH
AGK
ZNF850
SCN3A
INTS12
GSTCD
ZSCAN5A
PCM1
FCSK
GTF2H2C_2
GTF2H2C
KLHL20
SEL1L
CTDP1
CHMP7
C12orf73
KRI1
UBE2V1
NEDD8-MDP1
NEDD8
GMPR2
FNDC11
LSG1
PIK3CG
NKD1
CD3D
INO80B
EMSY
OSBPL8
EPSTI1
CTF1
CNPY2
PABPC1
ASAP1
EIF4A2
ARHGAP45
CNOT4
ZNF227
STING1
METTL26
RPL22
C17orf75
GINS3
C12orf43
HBP1
NDUFS7
STARD10
CLTC
TMEM143
SYNGR4
ATP5MF-PTCD1
ATP5MF
MAX
H4C8
BOLA1
FTL
NR1H3
ACP2
CASP8
EIF1AD
BANF1
NEIL2
MTA3
FKBP5
RAB30
TRAF3IP2
BRWD1
NRDE2
SIGLECL1
NUP153
VPS52
RPS18
OR1F1
LRRC29
RPL27
SLC24A1
SLC39A3
ARMC1
RNF220
S100A5
TSC2
NTHL1
ING4
VPS41
ZC3HC1
CYP2U1
GABPB2
UGT1A5
ZCCHC8
ZMPSTE24
UBB
GCSAML
SDHAF3
DDX49
COPE
GTF2H2
DUSP2
MRPL3
CHML
ALG10B
TMEM41A
NUMA1
LRTOMT
JRK
SPC25
COPS7B
PDE6D
RAB5C
RPS3
ADO
ARHGEF18
ITGAL
AKIRIN2
ZNF548
GTF3C5
IL10RA
ITK
DERL1
STYK1
HSPH1
EXO1
SLC39A8
SOAT2
THEMIS
PALD1
ZNF189
MRPL50
TXNDC9
EIF5B
RAB29
SNX16
ZNF277
DOCK4
DMAP1
KCNN3
ZKSCAN2
HMGB2
HDAC7
MB
PRAF2
PTPRCAP
NELFB
ZNF605
ZFPL1
CDCA5
MRPL48
OR4K15
TTC4
IFT74
PLAA
FBXO25
FRA10AC1
SREK1IP1
CWC27
TOP3B
SF3B5
MLEC
ATP5PO
BUB1
PSD4
TMEM199
POLDIP2
STOML2
RASAL3
UBL7
CALM1
ZNF652
CNIH4
AP1G1
FAM207A
TRUB2
COQ4
PES1
CTNNB1
INTS4
SPAG8
CSTF2T
DPY19L4
MDC1
GPR171
RPS3A
CDK19
AMD1
ZSCAN20
ZNF570
ZNF569
RALBP1
ZNF230
MTR
NMNAT1
LZIC
ZWILCH
RPL4
PLCXD2
C16orf54
FIS1
ESPL1
LRP6
PRSS23
PEX12
KIF15
KIAA1143
LETM1
SLFN12L
HEMK1
BRMS1L
LRRC1
IPPK
SRRT
ARHGAP30
TNFSF4
CLP1
TOR2A
IZUMO1
BMS1
ERAL1
ZNF350
CCDC174
ZNF584
ZNF45
PSMB6
TNFAIP8L2-SCNM1
TNFAIP8L2
IPO7
ZNF184
H2AX
CDK5RAP2
CWC22
ZNF628
NUP54
PROSER1
NHLRC3
TAB2
SMUG1
CDC14B
HHEX
SLC3A2
PRPF4
CDC26
PSMC3
MAD2L2
TBL3
LMNB2
ARHGAP15
ZNF420
MRPL58
CLDN12
VAV1
MC1R
MGRN1
ZNF805
PSMD3
HSCB
CHEK2
DIPK1A
ZBED4
ZCCHC4
RPL37
GNB2
RAB27B
GAS7
SEC11C
MRPL54
APBA3
VPS25
ANAPC5
HSD11B1
MAPRE2
THOC6
HCFC1R1
NR1H2
ZC3H6
RPLP2
RNF125
TOX
TMEM43
CHCHD4
MRPS23
GBA
ABLIM2
SLC25A51
ZNF554
NOLC1
METTL9
TMEM129
TACC3
C6orf89
RCOR1
ZNF773
PPP1CC
PBXIP1
H4C12
SCAND1
OGG1
TERF2
PPIL3
NIF3L1
INTS5
ZSCAN23
KCNA2
CAPN10
SNRPC
METTL7A
MDM4
ACBD6
MOB3A
IZUMO4
VPS13B
APBB1IP
TMEM186
PMM2
TM9SF4
LTN1
SH2D6
KMT5B
C2
EHMT2
CKAP2L
VGLL4
ABLIM1
ACSL6
WASF1
CDC40
TOGARAM1
KLHL28
ZNF407
SMG5
MYL6B
KMT2D
PIGL
ZNF37A
SEC13
PPIL2
ZNF688
LTA4H
ELP6
TATDN3
NSL1
SNIP1
MRTO4
EMC1
ZNF473
VRK3
TTC26
NDUFA2
IK
ANKRD17
H4C4
HNRNPA1L2
DNAAF2
QTRT2
CCDC191
ZNF451
TRMT1L
SWT1
SART1
GTF3C3
RFXANK
BORCS8-MEF2B
BORCS8
TPX2
CST7
LUC7L
CSRNP2
DFFB
CEP104
WDR11
ZBTB4
POLR2A
ATXN2
COMMD9
PHB2
GEMIN6
SLC35E2B
SSR3
H4C14
MTOR
LAS1L
MFSD3
S100Z
MIS18A
SUPT7L
SLC4A1AP
CPSF1
IGF1
PANX3
SNAP47
JMJD4
COMMD2
ARHGAP19
ZAP70
THAP1
PIH1D2
NKAPD1
PARP2
SESN1
HIRIP3
ZNF862
CEP57L1
MRPL30
MITD1
TMBIM4
ZNF384
CD2AP
UTP11
ANKRD13D
FOXP1
JMJD1C
SEPTIN9
ENOX2
SMN2
SMN1
CSDE1
ETFB
AHCTF1
COA6
DPEP2
EIF2D
GAS2
PNPLA6
BET1
EVI5L
TIAL1
SLC35A1
SLC35A3
RFX7
ZNF785
C1orf109
PUM3
CDCA8
DDX1
NPY
SNX27
SKP2
LMBRD2
PTRHD1
CENPO
ZNF32
RAD52
ZNF175
SLX4IP
TMED9
DRG2