ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6039039 | iPS derived chondrocytes
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX3584302: iPS derived chondrocytes

◢ SRX3584303: iPS derived chondrocytes

◢ SRX3584304: iPS derived chondrocytes

◢ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◢ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◢ SRX3584310: iPS derived chondrocytes

◢ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◣ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2B
ZNF335
RABL2A
PSMD1
DYNC1LI2
PSMG2
CEP76
CACTIN
DUSP29
NME6
IPO13
POLR3F
DZANK1
MAPKAPK5
TAOK3
SUDS3
FAM187A
EFTUD2
CCDC103
NVL
NEUROG3
DPH6
VTI1B
NUP85
VDAC2
DCTN1
RPL21
C19orf48
NUP205
TBCK
AIMP1
HSPA9
S1PR4
NCLN
STAM
GOSR2
MRPS7
MIF4GD
GGA3
TSNAX
RWDD1
POLR2E
GPX4
SKP1
HADHB
HADHA
STAM2
CDX2
TTC8
SEC61B
PNO1
ZNF576
IRGQ
SLC35B1
ATP5MG
RPS23
ATP6AP1L
MRPS5
SRD5A1
NSUN2
ZNF503
PAK1IP1
C6orf52
SMC2
LOC102724770
DGCR6
TLE6
CDCA7L
NNAT
BLCAP
UPF2
TSN
RBKS
BABAM2
VARS1
FARSB
CAPRIN1
PDAP1
BUD31
DLX4
NEUROD1
SFI1
EIF4ENIF1
REXO1
SUPV3L1
PES1
COX7A2L
ACTR10
FRG2C
LYRM4
FARS2
EXOSC5
BCKDHA
TMED1
SELENOF
HS2ST1
GOLGA5
DUX4
ZRANB2
FGFRL1
RPL35A
IQCG
LMLN
FAM104A
C17orf80
USP1
TM9SF1
IPO4
TSSK4
FZD8
PI4KB
PSMD12
RBBP5
MRS2
HSPA1B
ICE1
ADK
AP3M1
NDUFA4
WDR6
RPS27A
CLHC1
PTGES2
INSM1
PAF1
MED29
COMMD1
CCT4
DLL4
VEZT
FGD6
NEUROG1
SART3
ISCU
PALM2AKAP2
MUC20
MRPL11
RPS12
PDE6B
UFM1
RABGGTB
PIP4P1
OSGEP
APEX1
XPNPEP3
ST13
DNAJB7
PCBP1
ANAPC7
ATOH1
C6orf47
BAG6
APOM
PROSER1
NHLRC3
RAB11B
DNAJB8
DUSP6
NFKBIL1
DDX39B
ATP6V1G2
ECEL1
NKX2-3
SF3B3
COG4
ST18
MYRIP
DAPL1
RBL2
SHB
HESX1
POP5
GALNT10
PIN4
FOXC1
HES1
FRAT2
STK36
RNF25
ID3
EIF2S3
TAF9
RAD17
AK6
MBTPS1
RPS29
LRR1
FRG2
LEFTY2
LPIN1
ANKRD1
SEC11C
DENND1A
UNCX
PMAIP1
PNPLA1
GBX1
ARHGAP11A-SCG5
ARHGAP11A
CDH18
LIG3
GADD45GIP1
KLF17
SUCLG1
ZNF608
EHF
BNIP3
OR6B2
NDUFA10
CALM2
IL23R
NXPH4
ZNF664-RFLNA
ZNF664
CCDC92
TPRA1
UBE2I
GADD45G
SKIL
CERKL
PAX8
RPL7
RDH10
SEC22B
TLE2
AEN
PCBD2
RBPJ
TCP10L
SCIMP
CNTLN
ZNF585B
ZNF383
CCDC200
GATA4
OPA3
NCOR2
MRTO4
EMC1
KHDRBS1
PDHX
APIP
BCOR
TMEM70
ELOC
MSX2
PAH
ASCL1
ACOT2
MBNL2
NEUROG2
PHLDB2
AMOT
GORAB
FAM151B
ARL4D
TIGD1
EIF4E2
MAL
GTF3C4
DDX31
MAGEA11
DTNB
COCH
SMAD7
NKIRAS1
NR1D2
UPF3A
KDM6B
GJA10
ALKBH5
BMP7
HCRTR1
C5orf63
TMPPE
GLB1
MLH1
EPM2AIP1
TVP23C
RAB17
IL17RD
OTX2
ARHGEF38
CNPY2
ICMT
HES3
ZBTB38
SYBU
MYSM1
SLC22A24
RPN1
GSR
ZGPAT
ARFRP1
CDC73
RAD54L2
ZNF649
OAZ3
LYPD6B
SYT12
AXDND1
PRUNE2
DMBX1
USP44
MBD2
APLN
ZNF592
NKX2-6
HOXB1
BANP
C15orf61
ZNF652
HEY2
MARCO
CPVL
CHN2
CCDC85A
GPR108
TRIP10
LDLRAD4
PKIB
KCNN4
CERCAM
SPCS1
GLT8D1
SLAMF1
BICRA
FXYD2
ANKLE2
DSCAML1
SCAMP4
ADAT3
RAN
DUSP4
SRSF11
LRRC40
ETFDH
C4orf46
PLA1A
CHST12
MACROH2A1
GSTT4
CABIN1
RPP25
STK38
USP17L21
USP17L20
USP17L12
USP17L13
USP17L11
USP17L18
USP17L10
PRDM14
FZD10
MEOX1
MS4A4A
ZNF397
TMEM242
TFAP2A
CAV3
CNTN4
INKA2
KIF21B
RGS19
OPRL1
LKAAEAR1
PTCH1
USP17L22
EYS
OTX1
NOG
HNRNPA2B1
CBX3
NFATC1
BTNL9
CLEC10A
GATA3
ELF3
FRMD7
BAMBI
RSPO4
TRIM65
MRPL38
HECA
ATP6V0A4
LYPD1
FOXP2
GBX2
KCNK2
ZNF850
DDX3X
FOXA2
PDE12
STIL
PPP1R35
ZCWPW1
MEPCE
SYNE2
HEBP1
SNX1
CIAO2A
MTRNR2L1
TBC1D8
FAM118A
RPH3A
PCDHAC1
EFEMP1
SLC40A1
RGSL1
CFAP126
HAND1
ERLIN2
JAKMIP1
OLIG3
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
HNRNPD
MIER1
DNAI4
USP17L19
BUB1B
RYBP
DIRAS1
CLDN15
FIS1
ARHGAP28
TTC13
ARV1
ACKR3
LRMDA
HOXA3
HOXA2
GRHL2
METTL11B
PLEKHA5
NFE2
HIC2
CERS2
ANXA9
C10orf53
LIN28A
NCOA2
NTAN1
RBBP8NL
GPC6
NDUFV2
TYRO3
STRADA
MAST2
C6orf163
LIPC
SOX14
HOXA1
CCND3
TAS2R9
TAS2R8
TAS2R7
TCHP
IGF2
USP17L17
USP17L15
HAPLN1
SSPN
SLC12A3
MINK1
DLX6
RARA
ZFAND3
TMPRSS7
RPEL1
ST3GAL2
H2BU1
H2AW
SLC16A12
CDS1
NFIC
MID1
RUNX1T1
SNX16
RNF32
CADM3
CYP26A1
TMEM41B
CHKA
CD101
PDCD2
CHPT1
ZNF746
TLE5
VENTX
UTF1
BTBD3
TMEM275
H3-3A
TMCC3
CCDC172
MEIG1
DCLRE1C
ACOT1
PRSS22
SGK1
TBL1XR1
ANO1
MNT
YAP1
SDK1
PXMP2
POLE
TVP23B
BTF3
KAZALD1
KLF6
CCL26
UNKL
C16orf91
PPP1R1B
NAGLU
LCOR
NEUROD2
RIMS2
METTL24
ZNF285
OPLAH
PDPK1
CEMP1
ZNF436
SYT7
ZNF853
ETS1
HSPA1L
HSPA1A
TRAP1
TNS3
OSCAR
NDUFA3
RBBP7
ZNF90
FOXF1
GALNT8
ZMIZ2
PCLO
ZFP37
KAT6B
FDFT1
CCDC33
ARL14EP
LIPK
PRDM12
PRDM10
TEX46
KDM1A
EIF4H
SLC25A6
LEF1
HOXB9
MATR3
ZNF891
ZNF10
CXXC4
ADGRA3
WDR74
STX5
MTCH2
EN1
FAM234B
CD99L2
RIMS1
BRWD3
ZNF81
ZNF138
TMEM185A
TENT4B
PTPRE
RPS10-NUDT3
RPS10
SPIN1
STAT1
KCNJ4
FAM53B
PTPRG
SP7
CHD8
CLDN9
CLDN6
CCDC169-SOHLH2
CCDC169
LYRM7
HINT1
CEMIP2
NAV2
ZNF740
CSAD
SLC2A6
VIP
LIX1
STRA6
CENPBD1
PRSS8
CBX4
SLC39A7
RXRB
HSD17B8
COL11A2
BUB1
FANK1
STON1-GTF2A1L
FAM89A
WNT3
TEAD3
CCDC88C
PODXL
OTP
ASB6
APBB1IP
FAM24B
PAX7
FAM120B
DLL1
UBE2D2
TIPIN
AGO1
NBPF26
NBPF19
NBPF14
GARS1
TRIM45
GOLM1
SUCLG2
MACROD2
SEL1L2
ORMDL3
GSDMB
ERI1
FTL
BAX
SMUG1
TMEM167B
TXNRD2
COMT
TRIM56
ALDH3A2
PLAGL1
PHACTR2
LHX1
SYTL1
GYG2
GAGE10
GNG4
CNOT2
BCAT2
TNRC18
SEC14L1
UPK2
NELFA
PRSS47
SHBG
FXR2
GC
PKNOX1
SEMA3C
CDX1
DUSP12
RASL10B
YTHDF2
KIF26A
BTG1
RIT2
EVC
EVC2
DHRS3
PELI2
AHSP
ZNF552
ZNF296
GEMIN7
VIPR2
SH2B1
NFAM1
ZFP64
SYDE2
FBN2
FREM1
SERPINA1
ZNF292
SERTAD2
ASS1
REV1
ANKRD28
PARP16
HOXB3
HOXB4
HOXB5
WNT1
ARF1
LARP7
NOTCH2NLC
ARHGAP10
NOTCH2
G6PC2
HOXA4
ZP4
NR2F1
SERINC5
RAB11FIP1
GLRA1
LBX1
IGFBP2
LZTS1
ID2
BBS9
NHS
RARB
PDE4DIP
ZFHX4
ADNP2
ARID3C
TPM1
S100A10
RHBDD3
EWSR1
DCTN3
SOAT2
IGFBP6
URM1
NBAS
ADAM18
ITGB6
PHOX2B
DDAH1
CCN1
PDHB
TMEM120B
MAMDC2
PRRX1
MSX1
FABP7
CITED2
TLE4
MYLK4
SP5
ANK2
FGF19
MAB21L2
ASXL3
LRATD2
NAV3
KDM2B
ARID3B
TMEM107
ME3
CLGN
FAM222A
MEIS2
HOXC6
RGS12
CNTN1
MALRD1
ID1
NFIA
FOXP1
SMPDL3A
ERRFI1
HOXC4
CBFA2T2
TLE3
MTRNR2L2
MSH3
DHFR
MRPL3
SP2
GRSF1
EXOC2
PPFIBP2
ARSG
KDM8
RIMKLB
NCOA7
LAMA4
CR1L
TRABD2B
DMRT3
RPL34
HOXA5
KMT2A
HOXD3
NOTCH2NLB
NOTCH2NLA
SNAPC1
TBX3
RASSF2
PAX6
BFSP1
IFI16
SH3BP2
PARP11
MRPL34
DDA1
ABHD8
EVA1A
HOXC5
INAFM2
BRINP1
IER3
FLOT1
NDUFS7
NEK3
FGR
PKDCC
PYDC5
TCF7L2
SH3BP1
PLEKHO2
ALDH1A2
RFX2
METTL3
FKBP1A
SPATC1L
ARHGAP24
DBX1
RNF149
PDP2
SCGB1A1
TMEM14A
SULF1
OR10AC1
ABLIM3
CS
PSMB5
LYL1
MVB12A
CACNA1D
HIP1
PRDM6
SPG7
VOPP1
HUS1
HEXIM2
CMTM7
GTF3A
ETFBKMT
PANK4
HES5
ARID5A
TESC
ABCG2
NEO1
TLE1
TMEM212
ZFHX3
EAPP
KCNAB2
JAK3
MYBPC3
NUTM2D
FBXL18
PARK7
TBC1D10C
PPP1CA
PHC2
CCPG1
C15orf65
RPS6KA1
NOXO1
CHODL
TDG
SMC6
GEN1
C12orf73
C11orf24
SASH3
NRROS
EMP3
RAI14
NR1D1
PDZRN3
PNKD
KMT2E
ATG16L2
POR
RPS24
POLR3A
HOXD4
UBXN10
RASL12
PLA2G2C
KBTBD13
GRHL3
KDM3A
SLCO4C1
MBNL3
TAF12
CCDC88A
RASA4
SLC7A5
SPECC1
ARHGEF10L
NADK
ERCC1
ACTB
CATSPERG
BRWD1
IER3IP1
ZSWIM6
IRF2BP2
CARNS1
LMO4
DGKZ
SNCG
MMRN2
PAX3
RPLP1
BIN2
ENO1
NBEAL2
CCDC12
COL17A1
FOXB1
NKD1
SKIV2L
NELFE
PSTPIP1
EFHD2
KITLG
FAM110A
RASA4B
ADM
REV3L
TMEM104
NAT9
SHOX2
RSRC1
MTMR4
ATP23
CAND1
TBL2
SMURF1
OTUD7B
CLDN11
CRYAA
CRYAA2
DIAPH1
ZNF76
CCDC114
NBPF1
USP15
CAMTA1
CCDC102A
PLEC
WNT10B
SNX3
NEK7
ING1
CARS2
LRRN4
MEF2C
TRAF4
MTRNR2L8
MEF2D
AHNAK
VAV1
SH2D3A
MXI1
SOX21
NRXN2
ACSS3
HOXC8
ZNF775
RASSF5
LPCAT3
LNPEP
BHLHE40
SLC2A9
RARG
IMPG1
CPSF4L
NEBL
DENND2D
PPP1R18
NRM
CDC42EP3
ZNF367
IRX5
CCDC174
DIAPH3
GGCT
IQCH
AAGAB
RPL17-C18orf32
RPL17
REC8
NFKBIA
CCKAR
HEBP2
CBFA2T3