ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX1035589 | SK-N-SH
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX3584302: iPS derived chondrocytes

◢ SRX3584303: iPS derived chondrocytes

◢ SRX3584304: iPS derived chondrocytes

◢ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◢ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◢ SRX3584310: iPS derived chondrocytes

◢ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◢ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◣ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

MAMDC2
WDR74
STX5
TRIM48
DUX4
MTRNR2L1
SP2
LOC102724770
DGCR6
MTRNR2L2
MSH3
DHFR
SVOPL
SPATC1L
CRABP2
ZNF718
ZNF595
RFX1
DLG2
EAPP
HIBADH
ARID3B
SLC25A41
KHSRP
ZNF335
RABL2B
RABL2A
PSMD1
MAPKAPK5
NME6
CACTIN
POLR3F
DZANK1
IPO13
TAOK3
SUDS3
RWDD1
DYNC1LI2
NUP85
PSMG2
CEP76
VDAC2
HSPA9
FAM187A
EFTUD2
CCDC103
VTI1B
NVL
NUP205
POLR2E
GPX4
RPL21
TBCK
AIMP1
S1PR4
NCLN
GOSR2
MRPS7
MIF4GD
GGA3
DCTN1
C19orf48
ATP5MG
STAM2
EXOSC5
BCKDHA
REXO1
ZNF503
STAM
SRD5A1
NSUN2
FRG2C
HADHB
HADHA
SKP1
TSNAX
SEC61B
FARSB
NNAT
BLCAP
TSN
LYRM4
FARS2
PES1
UPF2
ZNF576
IRGQ
SLC35B1
ACTR10
NDUFA4
PAK1IP1
C6orf52
PNO1
CAPRIN1
DPH6
TLE6
TTC8
PSMD12
GOLGA5
COX7A2L
SUPV3L1
RBBP5
SART3
ISCU
VARS1
RPS23
ATP6AP1L
TMED1
MRPS5
RBKS
BABAM2
RPL35A
IQCG
ZRANB2
SMC2
PI4KB
ANAPC7
LMLN
PDAP1
BUD31
SFI1
EIF4ENIF1
PCBP1
SELENOF
HS2ST1
MRPL11
NEUROG2
USP1
ADK
AP3M1
ICE1
FAM104A
C17orf80
UFM1
RABGGTB
XPNPEP3
ST13
DNAJB7
RPS12
PROSER1
NHLRC3
SF3B3
COG4
HSPA1B
RPS27A
CLHC1
PIP4P1
NEUROG3
OSGEP
APEX1
TM9SF1
IPO4
C6orf47
BAG6
APOM
TSSK4
PAF1
MED29
COMMD1
CCT4
PPP1R1B
HES1
WNT1
DUSP29
ARF1
PDE6B
ICMT
HES3
ZNF608
NFKBIL1
DDX39B
ATP6V1G2
MBTPS1
CDX2
FRG2
PTGES2
UBE2I
LARP7
RPS29
LRR1
PIN4
NOTCH2NLC
FZD8
HOXA3
ARHGAP10
OR6B2
NDUFA10
VEZT
FGD6
NOTCH2
G6PC2
ARHGAP11A-SCG5
ARHGAP11A
HOXA4
MRTO4
EMC1
PMAIP1
HOXA1
TAF9
RAD17
AK6
ZP4
HOXA2
NR2F1
SUCLG1
ATOH1
SERINC5
NEUROG1
BICRA
ARL4D
PALM2AKAP2
PLAGL1
STK36
RNF25
EIF2S3
SEC11C
RPL7
RDH10
RAB11FIP1
GLRA1
ZGPAT
ARFRP1
BNIP3
PDE12
CCDC200
LBX1
IGFBP2
SKIL
LZTS1
GADD45GIP1
NEUROD1
DUSP6
OAZ3
ID2
CCDC33
INSM1
BBS9
LEFTY2
ETS1
NHS
RARB
PDE4DIP
ZFHX4
ADNP2
ARID3C
TPM1
S100A10
RHBDD3
EWSR1
UNKL
CNPY2
DCTN3
SOAT2
IGFBP6
GTF3C4
DDX31
MUC20
URM1
HOXB3
PCBD2
NBAS
DAPL1
CDCA7L
PDHX
APIP
FXYD2
C16orf91
CDC73
ADAM18
RPN1
ITGB6
TLE2
HOXB1
DLL4
ANKLE2
PHOX2B
UNCX
DDAH1
CCN1
DLX4
ST18
GORAB
PDHB
TMEM120B
ZNF585B
ZNF383
PRUNE2
SYBU
ID3
PRRX1
SEC22B
MSX1
FABP7
CITED2
ECEL1
TLE4
MYLK4
TPRA1
RARA
FOXP2
SP5
CERCAM
RBPJ
ANK2
FGF19
MAB21L2
NFE2
ASXL3
LRATD2
NAV3
CDH18
KDM2B
TMEM107
ME3
CLGN
ZNF746
FAM222A
KCNN4
GATA4
MEIS2
HOXC6
TMEM70
RGS12
ELOC
CNTN1
GPR108
MALRD1
MYRIP
ID1
ALKBH5
NFIA
TRIM65
MRPL38
FOXP1
PAH
ASCL1
SMPDL3A
ERRFI1
RBBP7
GADD45G
METTL24
TRIP10
HOXC4
CBFA2T2
DSCAML1
TLE3
MRPL3
POP5
GRSF1
HOXB4
IL23R
DMBX1
EXOC2
IL17RD
PPFIBP2
ARSG
KDM8
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
RIMKLB
KAZALD1
NCOA7
RUNX1T1
LAMA4
CR1L
USP17L21
USP17L20
USP17L12
MSX2
TRABD2B
USP17L22
DMRT3
RPL34
PRDM12
HOXA5
KMT2A
HOXD3
NOTCH2NLB
NOTCH2NLA
SNAPC1
TBX3
CYP26A1
OTX1
FRMD7
RASSF2
PAX6
ZNF652
BFSP1
IFI16
SH3BP2
PARP11
MRPL34
DDA1
ABHD8
LPIN1
EVA1A
HOXC5
INAFM2
BRINP1
SH2B1
IER3
FLOT1
NDUFS7
NEK3
FGR
PKDCC
PYDC5
TCF7L2
SH3BP1
PLEKHO2
ALDH1A2
RFX2
MBD2
TMPPE
METTL3
GLB1
SPCS1
GLT8D1
CBX4
FKBP1A
DHRS3
ARHGAP24
DBX1
RNF149
PDP2
AXDND1
UPF3A
SCGB1A1
TMEM14A
ERLIN2
SULF1
OR10AC1
ABLIM3
CS
PSMB5
LYL1
MVB12A
METTL11B
C5orf63
CACNA1D
HIP1
PRDM6
SPG7
VOPP1
HNRNPA2B1
CBX3
HUS1
HEXIM2
KDM6B
CMTM7
GTF3A
ETFBKMT
PANK4
HES5
LIN28A
ARID5A
TESC
MAGEA11
RPS10-NUDT3
RPS10
NELFA
ABCG2
NEO1
TLE1
SEC14L1
TMEM212
ZFHX3
KCNAB2
JAK3
STK38
MYBPC3
NUTM2D
FBXL18
MRS2
PARK7
CADM3
HSPA1L
HSPA1A
VIP
TBC1D10C
PPP1CA
PHC2
TIGD1
EIF4E2
CCPG1
C15orf65
RPS6KA1
NOXO1
CHODL
TDG
SMC6
GEN1
C12orf73
SRSF11
LRRC40
FRAT2
C11orf24
SASH3
NRROS
EMP3
RAI14
NR1D1
PDZRN3
KAT6B
HNRNPD
PNKD
KMT2E
ATG16L2
KIF21B
POR
RPS24
POLR3A
HOXD4
UBXN10
RASL12
PLA2G2C
KBTBD13
NCOR2
GRHL3
LYPD1
KDM3A
PRDM10
PAX8
SLCO4C1
MBNL3
TAF12
CCDC88A
SNX1
CIAO2A
RASA4
SLC7A5
TBC1D8
SPECC1
ARHGEF10L
NADK
ERCC1
ACTB
CATSPERG
BRWD1
USP17L13
IER3IP1
ZSWIM6
IRF2BP2
CARNS1
LMO4
DGKZ
SNCG
MMRN2
KLF17
FGFRL1
PAX3
RPLP1
HAND1
BIN2
ENO1
WDR6
NBEAL2
CCDC12
COL17A1
FOXB1
NKD1
SKIV2L
NELFE
PSTPIP1
EFHD2
KITLG
FAM110A
MEOX1
RASA4B
ADM
NCOA2
REV3L
TMEM104
NAT9
SHOX2
RSRC1
MTMR4
ATP23
CAND1
TBL2
STIL
SMURF1
OTUD7B
CLDN11
CRYAA
CRYAA2
DIAPH1
ZNF76
CCDC114
NBPF1
USP15
CAMTA1
CCDC102A
SLC39A7
RXRB
HSD17B8
PLEC
WNT10B
SNX3
NEK7
USP17L11
ING1
CARS2
LRRN4
MEF2C
TRAF4
MTRNR2L8
MEF2D
USP17L18
ASB6
AHNAK
VAV1
SH2D3A
GSTT4
CABIN1
MXI1
SOX21
NRXN2
ACSS3
HOXC8
ZNF775
RASSF5
LPCAT3
LNPEP
BHLHE40
TMEM242
SLC2A9
RARG
IMPG1
ZNF740
CSAD
CPSF4L
NEBL
LIG3
DDX3X
DENND2D
PPP1R18
NRM
CDC42EP3
ZNF367
IRX5
CCDC174
DIAPH3
GGCT
IQCH
AAGAB
RPL17-C18orf32
RPL17
REC8
NFKBIA
CCKAR
HEBP2
CBFA2T3
ZCCHC3
GATA6
C20orf96
LDLRAP1
CD79A
MNT
ZFYVE28
CFAP99
ZDHHC1
DMD
CD38
BCL3
BNC2
POLD2
ZNF414
HOXB5
CPVL
CHN2
SKI
INAVA
CNOT2
TRERF1
USP17L10
RAC2
LRIG3
DTX4
CMTR1
TTC13
ARV1
PCNA
CDS2
TUBA1C
POLR2J3
TUBB
MDC1
SYNPO
IQGAP2
KHDRBS1
LFNG
SPACA1
SUPT4H1
SLC38A10
LRIG1
SCAMP4
ADAT3
RXRA
TYRO3
NDRG1
SMARCA2
MYO1G
NTRK2
OPA3
LOC102724265
CLDN2
RNASEH2B
TPST2
CREB5
GPAA1
EXOSC4
MYO1B
PPIB
MINDY2
PTK2B
DCSTAMP
H6PD
SLC9A1
SIRT4
FTL
DISP2
PDPN
ADGRG5
GALNT10
KBTBD11
PKN2
DIPK1B
COL11A2
NDFIP2
MAPKAPK3
CISH
PLCB2
SMAD3
FOXA2
CDK5R1
AGTRAP
RYBP
GUCY1A1
USP3
CDX1
ADCY7
H2BU1
H2AW
ERI3
SHB
SEPTIN4
NKIRAS1
RPL22
RNF207
TXNRD1
MUC12
PEX14
DFFA
BST2
GFI1
MOBP
MYO1F
FAM120B
NAA10
ARHGAP4
KCNH2
CYP51A1
YTHDF2
SMARCD2
PKM
NAA80
IFRD2
HYAL3
PCTP
TMEM275
PRDM1
HESX1
ELANE
CFD
ZNF397
PPCDC
BAX
MRPS24
RABGAP1L
CYP2E1
SLC35E2B
PPP1R1A
NOTUM
NDUFV1
TBRG4
ARHGEF1
HNRNPF
KIF5C
CCND3
NR1D2
ADORA2A
COL23A1
C1orf105
RNF166
CTU2
CYCS
ADGRL2
TAF15
RNF139
RAB11B
IGF2BP3
ANKRD1
SH3TC1
DYNLL1
GSPT1
TMEM9
SP7
CRYBG1
EVX2
CNTN4
DGAT2
ZDHHC4
BAIAP2
CEP41
HMGCS1
ARIH2
SYTL1
SYTL3
MECOM
ABHD17A
CBWD5
CBWD3
SCNN1A
LTBR
TUBB3
MC1R
RNPEPL1
DUSP28
ANKMY1
DPP9
SBF1
PIK3AP1
CLIC4
BNIP2
ARID2
THRAP3
B3GALT5
SOD2
MDFIC
KCTD6
SEMA6D
CPT1A
CDC42EP2
PTP4A2
IL6R
PRSS56
CHRND
AKIRIN1
LAT2
KIF26A
SLC35E2A
ZFX
DHX16
ABHD11
KANSL3
FER1L5
CYTH4
EVX1
MYEOV
PDE4D
CLDN9
LRGUK
PTGES3
FOS
AGO1
PCDH11Y
NR2C1
MAGIX
MBD6
GAS7
DDIT3
TMEM222
FAM118A
FAF2
ZNF285
NECTIN1
C12orf50
C12orf29
RND3
SRPRA
SMUG1
RBL2
KCNIP4
ARMC12
HHIP
STAT1
HNF1A
VGLL4
NXPH4
WT1
FCHSD2
SSX2IP
CTTN
PXYLP1
ZNF341
ELMO1
CXXC4
AHDC1
ATXN1L
UPP1
SNAPC3
CD164
TBX2
TRMT6
MCM8
SLC39A13
USP17L17
CSRNP1
BAZ1B
LIX1
SLAMF8
KLHL7
SMIM3
EFNB2
CALM2
ANKRD13D
DTNB
RNF103-CHMP3
RMND5A
TYROBP
NFKBID
HCST
UNC13D
SEMA4D
TSPAN16
TTI2
RHBDF2
PRRC2A
AIF1
NR4A2
H2BC17
H2AC17
PIP4P2
LAPTM5
EIF1B
MAP2K1
CD151
DOT1L
MYADM
NMNAT1
LZIC
CENPH
BTBD1
ZNRD2
GATD3B
GATD3A
FAM89B
EHBP1L1
CLTC
MIER1
DNAI4
SEH1L
RFESD
ZFHX2
ZNF25
VANGL2
USP42
ARHGAP45
MTCH1
MAD1L1
ASNS
ASB1
SLC3A2
SYNJ2
SLC10A2
SOGA3
IL21R
ZNF3
COPS6
STX18
PHF19
MET
LYN
TMEM143
SYNGR4
PPP1R35
RNF125
PRKCD
SLC43A3
LYPD6B
SEBOX
CNTLN
RASGRP2
HK3
PPP2R5A
AQP6
CPA1
PEAK3
MRPS31
H2BC5
H1-4
GFRA3
NAGLU