ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535453 | A-375
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◣ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

PHC2
EXD1
CHP1
SEMA6A
H4C15
H4C14
DPY19L4
STX16
FAM98B
STX18
DDIT4
MTRNR2L2
MSH3
DHFR
IST1
MRPL21
IGHMBP2
H4C12
H4C11
SAR1B
GSTA4
NUF2
GBA
AAR2
FRA10AC1
NR1H3
ACP2
TUBGCP3
C17orf75
SMARCD2
SLC44A1
H3C13
H2BC18
NME1-NME2
NME1
UCHL5
RO60
SF3A3
FEM1B
DMAP1
H3C15
H3C14
H2AC19
H2AC18
MTRNR2L1
H4C5
TPRKB
RAD54L2
WDR74
GALK2
RCAN1
COPS2
CCDC200
TRPV2
JRK
GTF3C3
SLC20A1
PHLDA1
RRP15
RASSF5
H1-2
H3C3
H2BC3
RBBP5
SNAP47
JMJD4
MTRNR2L8
RARS1
EIF1AD
BANF1
NPAS4
TMEM107
DSTYK
TBC1D19
VWA8
RPL37
DCAF10
ATR
IFRD2
H2BC5
H1-4
AP3S2
FLOT1
IER3
TATDN3
NSL1
EIF2D
H4C4
S100A16
MRPL16
TOP3B
CDKN2AIPNL
NDUFB7
SELENOH
ACOT7
RPS7
RPTOR
STX3
USP30
CDK5RAP1
RAB5IF
MAN2C1
KMT2C
TRIB3
NDUFAF1
TSEN15
DHRS3
SCNM1
LYSMD1
NDUFA12
TRIP4
OGT
HPCAL1
BFSP1
DCP1A
ZSCAN30
FCGR2A
PCID2
CUL4A
H2BC21
H2AC21
H2AC20
SIRT4
C12orf73
CSRNP1
GTF2H2C_2
GTF2H2C
SPOP
KLHL20
DRG2
YWHAE
STAT3
RPS6
SPRY4
SNRPB2
E2F6
SSBP1
CLUAP1
C16orf90
LAMP1
COMMD2
S100A2
VIRMA
TACO1
YARS1
S100PBP
TEFM
UCKL1
WDR36
BNIP1
HEXA
C11orf49
ZNF212
METTL9
IRS2
GSTP1
SLC24A1
INTS14
TRIAP1
PEX3
ADAT2
MTF2
LRRC47
MANBAL
NDUFS3
KBTBD4
ZNFX1
JUNB
VPS25
AP3B1
WDR24
HMGB1
USPL1
EEF1A1
VANGL2
ST3GAL2
TMA16
LARS2
PLEKHM3
KANSL3
FER1L5
TEKT2
ADPRS
DPY19L3
SPATA24
H4C2
H3C2
H2AC4
ADNP
RTN4
WWP2
INTS12
GSTCD
MRPL44
COL23A1
IFI16
PYDC5
ALG10B
SPATA25
NEURL2
CTSA
TMEM101
EIF3G
ADPRHL1
STAT6
IPO4
FBXW2
UNG
ALKBH2
GTF2H2
GAB2
GPRC5A
PDE6A
CCNL1
PSMF1
RPL32
TMEM256
NLGN2
MRPS23
CHD2
NECAP2
SNX17
EIF2B4
DNAJC25-GNG10
DNAJC25
TOR1AIP2
TOR1AIP1
DDX1
DNAJC24
DCDC1
S1PR2
TVP23B
DPP9
MRPL3
SNRPB
EXOC3L1
E2F4
NOC4L
DDX51
ARIH1
CCND1
PMPCA
ENTR1
TTPAL
VWA5A
DDX23
NDUFS7
DMAC1
SLC3A2
ACBD6
TMEM242
CTSC
ZNF391
AGMO
PAFAH2
RNF151
TBL3
NFXL1
H1-3
GGNBP2
WDR11
RTF2
HTR5A
H4C6
ALG10
ARHGEF12
SREK1IP1
CWC27
SSBP2
NDUFC2-KCTD14
NDUFC2
EFNA1
RBM28
RAB18
AURKAIP1
STMN3
RTEL1
TPR
ODR4
NCBP3
ATF3
ANKRD18B
CASC3
TRUB2
COQ4
ZC3H6
RCOR3
RPS8
POGZ
TUBB1
NOTCH2NLC
DPH7
RPS2
INO80C
RINT1
ITGA3
ZNF827
KBTBD6
TRIB1
INTS5
RPL26
GMEB2
SERPINA3
INTS1
DIAPH1
CCNC
COX16
TEX46
KDM1A
DRAP1
C11orf68
CCDC107
IQSEC3
CHD1L
PRKAB2
ZNF830
CCT6B
RACK1
RAB7B
KCNMA1
SRFBP1
LRRC37A3
TESK1
PIP5KL1
ZBTB45
MTAP
SLC33A1
DPP8
SH3GL1
CHAF1A
EDC4
ODC1
ZMPSTE24
DUS1L
MTERF1
ZSCAN25
PRKCE
FZD1
MNAT1
AVEN
CPLX2
GRAP2
CDC73
RRN3
THAP5
DNAJB9
PFKFB4
CHI3L2
UCN2
MUS81
CFL1
SLC25A51
RBM45
PDE11A
H2AX
SCARF1
RILP
COG2
RGPD2
RGPD1
FAM227B
DTWD1
UQCC1
UFSP1
ACHE
MED23
TTC4
SEC16B
BAGE
BAGE4
BAGE3
GTF2I
C10orf88
RFXANK
BORCS8
DHX8
DUS2
DDX28
GOSR1
ANP32E
KNL1
ADAD2
TAF1C
PRADC1
CCT7
MRPL58
H2BC8
H2AC8
PRRG2
NOSIP
PSMD6
OTUD7B
CSNK1D
RCC1
ATXN2
H3C10
H2BC14
H2AC14
TTC33
WNK1
ATP5MF-PTCD1
ATP5MF
TRPC4AP
RPL11
KMT2D
ITGB3BP
EFCAB7
METTL15
KIF18A
NOB1
COQ5
WWTR1
CFAP298-TCP10L
CFAP298
NOC3L
SUPT5H
MACC1
H4C3
H1-6
MRPL38
FAM133B
WWOX
BCL9
BRD2
SRA1
ORMDL3
HEXIM2
POLDIP3
CCDC86
TIGD1
EIF4E2
CPPED1
TEX9
RFX7
REX1BD
H1-0
GCAT
TMEM238
RPL28
NFATC2
SOX10
BANP
BOD1L1
TUT1
PSMB6
NCOA3
PPP4R3B
RCC1L
ZNF106
SNAP23
SRSF6
ZNF253
FXYD1
LGI4
RPS27
RAB13
ZER1
ANKRD40
ZBTB37
SLC35A3
MTHFS
ILVBL
RUVBL1
ZC3HC1
VPS72
ATF6
NSUN4
BICD1
CALR3
C19orf44
RPL23A
RAB34
MRPS14
INPP5F
SNTB1
TTI2
EIF4A2
HNRNPA1L2
NBPF1
RFX3
ZSCAN22
ZNF554
ZC3H10
RPL41
MRM3
GLOD4
TNFSF14
TP53BP2
NHEJ1
TMEM40
SPIN2B
POLR2J
LSM8
LRRC37B
TFAP2B
TRIM60
RPL29
RPS3A
RPS14
MRPL39
FAM189B
WASHC5
NSMCE2
DDX19B
AARS1
CERS2
SLC36A1
ANXA9
C7orf61
SNRPE
NMNAT1
LZIC
LMNA
SIT1
FUS
RPL13
CFAP20DC
CT45A3
EXD2
LDAH
SLC26A2
HOOK2
USP2
RNF216
TMEM115
UTP3
MCOLN1
SNX19
BCL3
RPL13A
ANAPC5
AP4E1
CCDC88A
C16orf72
RPL7
RDH10
ARID1A
GPR176
ZNF708
EPHA3
ZNF56
VPS45
SDHAF3
ABHD12
PYGB
AK3
PCOLCE
MYBPC3
C16orf91
SEC13
CHCHD2
MFF
SEC22B
NAA20
TRA2B
TAF5
BBS1
CAAP1
LTBR
EMC3
PDE6D
COPS7B
CBWD2
NBN
MBTPS2
KCTD3
VIM
TENT4A
PARP4
TRAF1
ZCCHC4
YJU2
SART1
THOC5
LIG4
TPK1
TBL1X
ABHD13
NDRG1
PKIG
H3C8
H2BC10
DCUN1D5
TAF13
PBK
RBM14-RBM4
RBM14
CDH19
CWC25
LRRC59
MRPL48
HNRNPH1
MKRN1
WBP1
INO80B
C8orf33
LSM5
AVL9
NOTCH2NLB
AARS2
RAF1
NFE2L2
ZNF791
ZNF490
ITPKC
COQ8B
LRP6
FAM228B
SF3B6
OSBPL11
ELOB
NDUFAF5
ESF1
NACA
TRIM46
KRTCAP2
CEP120
GLIPR1L1
CAPS2
LDHA
LYPLAL1
NREP
PLEKHG5
PPP1R1B
POLG
POLR3B
FRG1
FANCD2
LAMTOR5
RMDN2
PCOTH
MIPEP
UNK
MTR
POLR2J3
TCTE3
ERMARD
ZNF564
RPL7A
MED22
RANBP6
COIL
MARCHF7
CSKMT
C11orf98
HOXB3
STEAP1B
SEC61A1
NOTCH2
CDC16
EIF1
VPS33A
RFFL
DEF8
ARMH3
IDH3B
GPATCH4
DDX5
MEOX2
DNM1L
ZNF45
FAM187A
REXO4
ADAMTS13
MRPL40
HIRA
SMG8
TOMM20
CRB1
GTF2IRD2B
ID1
H2BC12
H2AC12
RASA3
INTS2
APH1B
LTBP1
SLC25A21
USP4
EML2
MAPRE2
MBNL2
VWA1
NSA2
GFM2
STMP1
ZBTB40
LONP2
ABCC11
RBM17
PARP2
YBX3
ZNF443
TUBA1C
PSMB4
FBXO38
SURF6
TTC26
CBX5
HNRNPA1
H2BC11
H2AC11
NANOS3
ERMP1
KDSR
H3-2
ZNF205
COL16A1
LOXL4
BOD1
LTA4H
DNM2
RPL5
PNPO
WIZ
STK4
LUC7L3
CALM2
GNPAT
C1orf131
ZNF76
ATP5F1E
ALDH9A1
ELAVL3
SRSF5
CHD1
PLPP4
PCGF2
SCGB1C2
ATAD2B
KDM6B
SH3TC2
SPRY2
CT45A9
CT45A8
CT45A2
ZNF337
FBXL18
TIMMDC1
SAMD10
PRPF6
TAF3
IPP
GOLGA4
IL6R
TMEM170A
SPRED1
FAM78B
XKR7
MAGEA2B
MAGEA2
RPS21
DCAF8
HEMK1
C3orf18
H4C8
UBXN1
KMT2E
EFCAB2
EPB41
MMAA
TMCC2
ZNF561
TAGLN2
ZNF609
PLA2G4C
MYPN
COMMD1
GRPEL2
CCT4
CLTC
TRMU
RPL37A
MLEC
SACM1L
DHX9
FCRLB
MCL1
PEX2
COA1
TMEM41A
SNRPD1
CTNNB1
SPRED2
BORCS5
LARP1
RNF6
IFT46
RHBDF1
PRNP
DUSP4
GIP
HIKESHI
RBSN
LSM12
G6PC3
RPL35
ARPC5L
KIAA0895
H2BC13
H2AC13
DCLRE1B
AP4B1
CAPRIN2
ABCA1
ARGLU1
APP
CCDC90B
TNFRSF12A
THOC6
HCFC1R1
TIMM10
PTPN6
C12orf57
WASHC2C
GTPBP3
ANO8
PPP2CB
OPN3
CHML
APBB2
PDE8A
GFOD2
CTHRC1
PTPN13
BACE1
CLDN6
SPRYD4
ACOX3
TRMT44
DIDO1
GID8
BUD13
SLC35A4
APBB3
ABCA3
LTBP3
OR2L13
OR2AJ1
LIFR
ABCA10
MRPS15
MDM4
SLC35E1
THOC3
SEPSECS
DISC1
SFPQ
H3C12
H2BC17
H2AC17
DYNLL1
SPIDR
ZNF282
PKD2L2
SRSF9
ABR
FXYD3
FLRT3
ZP4
HMCN1
ARL14EP
BAIAP2
EIF2B3
COMMD4
RPL30
TMEM167B
TUBB3
MC1R
ESD
SCRN1
ABCF2
TRAPPC3
TMEM199
POLDIP2
RPL12
LRSAM1
SH2B1
AHCY
ALKBH3
BMS1
GABPB2
SRSF2
MFSD11
MAPKAPK5
ZBTB17
SOD2
WTAP
THEM4
IER5L
ZSWIM4
DNAJB1
ARMC8
KDM8
SRRM1
TECR
ZNF846
CNP
TMEM106B
SUPT20H
GRHPR
SLC6A15
EMP1
ISLR2
FOXJ3
PDE4DIP
MANF
SLC9B1
H2BC7
NECAP1
H3C4
H2AC7
TAF10
INPPL1
KLHL9
ARCN1
NDUFA4L2
UBAP1L
PANK4
HES5
RPS28
NDUFA7
C18orf25
MTRF1
C2orf42
PIKFYVE
ABHD2
ANKRD13D
SLC25A28
ATF1
RGL1
ARPC5
HM13
INTS6
ZNF579
USP28
SNTB2
DAB2
NAA16
GEM
PCARE
PSMD11
TMEM186
PMM2
UTP25
GNAI2
SRSF7
ADAM17
SPATC1
NR3C1
TRMO
H2BC4
H2AC6
MAMDC2
NAGPA
GPR89A
RBM7
C11orf71
BLOC1S2
MTMR9
FAM207A
CDC25C
FAM53C
TSN
MRPS18C
HELQ
CCDC59
ZNF513
TSSK6
NDUFA13
MCAT
ABCB10
ATP6V0D1
AGRP
MAT2A
SLTM
MTMR2
FNIP1
FGFBP3
MAGI2
DGAT1
LRCH4
FBXO24
SMG7
PCIF1
ZBTB38
DPH6
NDUFAF6
PLGRKT
B9D1
H4-16
H2AJ
BCAR3
CASP7
TIMP1
CES4A
CCDC174
KRR1
MRPL1
TIGD6