Search for Data Metadata
| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Data detail |
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| Integrated List | JSNP | 10.18908/lsdba.nbdc00114-005 |
List of data from "Mapping Information" and "Screening Information" put together every polymorphism (unless the polymorphism is mapped on two or more chromosomes).
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From "Screening Information" and"Mapping Information" |
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Data detail
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| Mapping Information | JSNP | 10.18908/lsdba.nbdc00114-004 |
Information from mapping polymorphisms on the genome.
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From "Screening Information" and "Allele Frequency" |
The location of the SNPs are mapped to the RefSeq (GRCh37) contig sequence, masked by MaskerAid, using BLAST with the SNP flanking sequence, after e-PCR preformed with the primers for amplification to extract their screened regions. |
Data detail
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| Polymorphism Sequence | JSNP | 10.18908/lsdba.nbdc00114-001 |
Information on polymorphisms (SNPs and insertions/deletions) and their flanking sequences
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From "Screening Information" |
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Data detail
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| Screening Information | JSNP | 10.18908/lsdba.nbdc00114-003 |
Information from polymorphism screening experiments.
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Exons, promotor regions and introns selected from human genomic sequences in GenBank and RefSeq were PCR amplified using DNA from 24 (IMS-JST), 48 (RIKEN) or 40 (TJWU) individuals as templates, and sequenced with capillary sequencers. |
PolyPhred was used to assist verification of SNPs by eye inspection. |
Data detail
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| cDNA library Table | KAIKOcDNA | 10.18908/lsdba.nbdc00951-005 |
List of Bombyx mori cDNA libraries. |
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Data detail
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| Data name | Database name | DOI | Description of data contents | Data acquisition method | Data analysis method | Data detail |