JSNP ID

type of gene region where the polymorphism

promoter*1: annotated in GenBank entries
promoter*2: predicted by GENSCAN
promoter*3: putative promoter (1.5kb upstream of the initiation position of mRNA records in the RefSeq)
CDS*1: annotated in GenBank entries either positively or passively
CDS*2: predicted by GENSCAN
CDS*3: extracted by homology search with cDNA
exon*1: annotated in GenBank entries either positively or passively
exon*3: extracted by homology search with mRNA/cDNA/Unigene records
intron*1: annotated in GenBank entries or intervened by Exon*1 and CDS*1
intron*2: intervened by CDS*2
intron*3: intervened by exon*3 and CDS*3
others: surrounding regions of genes

type of polymorphisms

SNP: single nucleotide polymorphism
IND: insertion/deletion
MIC: microsatelite

minor allele frequencies in dbSNP; number in brackets means JSNP original allele frequency

allele observed

dbSNP ss (submitted SNP) number assigned

dbSNP rs (reference SNP) number assigned

ID in HGCbase

5' flanking sequence

3' flanking sequence

accession No. of the sequence for polymorphism screening

position of the polymorphism in the sequence for polymorphism screening

gene name related to the sequence for polymorphism screening

OMIM ID related to the sequence for polymorphism screening