ID in HGCbase

JSNP ID

Chromosome number

cytogenetic band

information source of cytogenic band
- GenBank "/chromosome" and "/map"
- EntrezGene "CHR" and "MAP"
- UniGene "CHROMOSOME" and "CYTOBAND"

type of polymorphisms

SNP: single nucleotide polymorphism
IND: insertion/deletion
MIC: microsatelite

minor allele frequencies in dbSNP, number in brackets means JSNP original allele frequency

allele observed

dbSNP ss (submitted SNP) number assigned

dbSNP rs (reference SNP) number assigned

5' flanking sequence

3' flanking sequence

accession No. of the mapped sequence

position of the polymorphism in the mapped sequence

gene name relevant to the mapped sequence

OMIM ID relevant to the mapped sequence

accession No. of the sequence for polymorphism screening

position of the polymorphism in the sequence for polymorphism screening

gene name relevant to the sequence for polymorphism screening

OMIM ID relevant to the sequence for polymorphism screening

Type of gene region

promoter*1: Annotated in GenBank entries
promoter*2: Predicted by GENSCAN
promoter*3: Putative promoter (1.5kb upstream of the initiation position of mRNA records in the RefSeq)
CDS*1: Annotated in GenBank entries either positively or passively
CDS*2: Predicted by GENSCAN
CDS*3: Extracted by homology search with cDNA
exon*1: Annotated in GenBank entries either positively or passively
exon*3: Extracted by homology search with mRNA/cDNA/Unigene records
intron*1: Annotated in GenBank entries or intervened by Exon*1 and CDS*1
intron*2: Intervened by CDS*2
intron*3: Intervened by exon*3 and CDS*3
others: surrounding regions of genes