Search for Data Metadata
| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Data detail |
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| Cluster Table | KAIKOcDNA | 10.18908/lsdba.nbdc00951-002 |
List of number of identical cDNA sequences that make up cluster. |
EST Table data |
The clones those sequences have more than 95% identity each other in a region over 100bp were considered to be the same cluster. Number of clones which belong to each cluster was classified in every cDNA library. |
Data detail
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| EST Table | KAIKOcDNA | 10.18908/lsdba.nbdc00951-001 |
List of silkworm ESTs (cDNAs) consisting of publicly available data in addition to sequences registered to public database as of September 2011. |
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Each EST was annotated by homology search (BLAST) against six protein databases. ESTs were grouped based on all-against-all BLASTN. For each cluster (group), a representative sequence was chosen, which contains the most upstream region between contigs in each cluster. Each representative sequence was annotated by InterProScan. |
Data detail
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| InterProScan Result | KAIKOcDNA | 10.18908/lsdba.nbdc00951-004 |
List of the result of InterProScan target the representative EST. |
ORF Table data |
ORFs of the representative ESTs in the clusters were annotated by InterProScan. |
Data detail
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| ORF Table | KAIKOcDNA | 10.18908/lsdba.nbdc00951-003 |
List of open reading frames of the representative ESTs. |
EST Table data |
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Data detail
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| DGroup | KEGG MEDICUS | 10.18908/lsdba.nbdc01185-004.V006 |
KEGG DGROUP is a database for structurally and functionally related groups of drugs, especially from the viewpoint of drug interaction networks. |
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Data detail
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| Data name | Database name | DOI | Description of data contents | Data acquisition method | Data analysis method | Data detail |