| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| Data of structural flexibility | ConfC | 10.18908/lsdba.nbdc00400-004 |
The regions of structural flexibility are selected with the Z score of temperature factor (B-factor) values by Cα atom of each residue in PDB. |
confc_disorder.zip
(3.7 MB) |
http://togodb.biosciencedbc.jp/togodb/view/confc_disorder#en |
PDB (Protein Data Bank) |
The regions of structural flexibility are selected with the Z score of temperature factor (B-factor) values by Cα atom of each residue in PDB. |
130,563 entries |
Data detail
open_in_full
|
| Protein structure image | ConfC | 10.18908/lsdba.nbdc00400-006 |
Structure images of the protein which has structural flexibility.
|
confc_structure_image.zip
(1.3 GB) |
- | 130,547 entries |
Data detail
open_in_full
|
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| Supplement data for conformation changes by some binding | ConfC | 10.18908/lsdba.nbdc00400-002 |
The distance values of φ and ψ between the superimposed protein structures of each residues are calculated, and the Z score of distance is computed.The information about a regions of structural change sekected with the Z score is stored. |
confc_part.zip
(231 KB) |
http://togodb.biosciencedbc.jp/togodb/view/confc_part#en |
PDB (Protein Data Bank) |
The distance values of φ and ψ between the superimposed protein structures of each residues are calculated, and the Z score of distance is computed. Finally, the regions of structural change are selected with the Z score |
12,692 entries |
Data detail
open_in_full
|
| InCeP | CREATE portal | 10.18908/lsdba.nbdc00403-002 |
mKIAA intracellular signaling pathway. |
create_portal_incep.zip
(1 KB) |
http://togodb.biosciencedbc.jp/togodb/view/create_portal_incep#en |
Immunoprecipitation: Extracts derived from adult mouse tissues and cell lines were immunoprecipitated using anti-mKIAA antibodies.
|
Mass spectrometry: Results obtained by LC-MS were analyzed by Mascot and precipitated proteins were predicted.
|
50 entries |
Data detail
open_in_full
|
| InCeP images | CREATE portal | 10.18908/lsdba.nbdc00403-003 |
Image files of mKIAA intracellular signaling pathway. |
create_portal_images.zip
(13.4 MB) |
- |
From "Keymol net data" |
- |
76 files |
Data detail
open_in_full
|
| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata