| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| Clone | ClEST | 10.18908/lsdba.nbdc01137-001 |
Infomarion of clones of each Cimex lectularius EST library |
clest_clone.zip
(660 KB) |
http://togodb.biosciencedbc.jp/togodb/view/clest_clone#en |
One pass sequencing from 5' termini using the Sanger sequencing method with ABI3130xl |
Basecalling by the phred program |
7,389 entries |
Data detail
open_in_full
|
| Cluster | ClEST | 10.18908/lsdba.nbdc01137-002 |
Information of clustered sequences including Blastx search results and GO annotations |
clest_cluster.zip
(525 KB) |
http://togodb.biosciencedbc.jp/togodb/view/clest_cluster#en |
"Clone" dataset |
Clustering using the phred/phrap program, Blastx homology search against a non-redundant protein database from the NCBI web site, and describing presumed function and GO annotation using the Blast2GO software. |
3,161 entries |
Data detail
open_in_full
|
| Conformation analysis | ConfC | 10.18908/lsdba.nbdc00400-005 |
Results of conformation analysis for PDB files (raw data)
|
confc_datafile.zip
(63.9 MB) |
- | 352 entries |
Data detail
open_in_full
|
||
| Data of conformation changes by some binding | ConfC | 10.18908/lsdba.nbdc00400-001 |
A protein structure pair which ID% (sequence identity) is more than 99%, and Dmax (maximum distance between Cα atoms of superimposed protein structures) is more than 20 Å, is stored. |
confc_all.zip
(14.2 KB) |
http://togodb.biosciencedbc.jp/togodb/view/confc_all#en |
PDB (Protein Data Bank) |
The distance values of φ and ψ between the superimposed protein structures of each residues are calculated, and the Z score of distance is computed. |
352 entries |
Data detail
open_in_full
|
| Data of evolutionary structure change | ConfC | 10.18908/lsdba.nbdc00400-003 |
The information about a regions of structural change by mutation, insersion and/or deletion is stored. |
confc_ev.zip
(373 MB) |
http://togodb.biosciencedbc.jp/togodb/view/confc_ev#en |
PDB (Protein Data Bank) |
- |
169,962 entries |
Data detail
open_in_full
|
| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata