If a database is inadequate in terms of its description, unclear with respect to the terms of use, or is not downloadable, it may not be fully used, cited or rightly acknowledged by the (research) communities. This is even true for databases with high-quality datasets.
The Life Science Database Archive maintains and stores the datasets generated by life scientists in Japan in a long-term and stable state as national public goods. The Archive makes it easier for many people to search datasets by metadata (description of datasets) in a unified format, and to access and download the datasets with clear terms of use (see here for detailed descriptions).
In addition, the Archive provides datasets in forms friendly to different types of users in public and private institutions, and thereby supports further contribution of each research to life science.
| Database name⇅ | Maintenance site⇅ | Principal creator⇅ | Database classification⇅ | Organism⇅ | Summary⇅ | License⇅ |
|---|---|---|---|---|---|---|
| National Institute of Agrobiological Sciencesopen_in_new | Shoshi Kikuchi | Plant databases - Rice, Microarray, Gene Expression | Rice |
RED is the database that aggregates the gene expression data analyzed with 8987EST array in the Rice Genome Project.
|
CC BY-SA Detail |
|
| National Institute of Advanced Industrial Science and Technology open_in_new | Hideki Nagasaki | Nucleotide Sequence Databases - Gene structure, introns and exons, splice sites | 6 species (human, mouse, fruit fly, nematode, thale cress, rice) |
The database represents classified patterns of alternative splicing (AS) and alternative transcriptional initiation (ATI) in six eukaryotic genomes.
|
CC BY-SA Detail |
|
| National Institute of Agrobiological Sciences open_in_new | Shoshi Kikuchi | Experimental Methodology | Rice |
Comprehensive information around the constitution of the Microarrays on Rice Microarray Project
|
CC BY-SA Detail |
|
| National Institute of Agrobiological Sciences open_in_new | Takuji Sasaki | YAC clone | Rice |
Physical mapping of rice YAC clones selected with the RGP DNA markers.
|
CC BY-SA Detail |
|
| National Institute of Agrobiological Sciences open_in_new | Takuji Sasaki | DNA marker | Rice |
The database of DNA markers (STS and CAPS markers) that were developed to detect polymorphism in Rice.
|
CC BY-SA Detail |
|
| Database name⇅ | Maintenance site⇅ | Principal creator⇅ | Database classification⇅ | Organism⇅ | Summary⇅ | License⇅ |