Database Description

General information of database
Database name	RGP caps
Alternative name	RGP: 332 PCR-based genetic markers on rice chromosomes
DOI	10.18908/lsdba.nbdc00318-05-000
Creator	Creator Name Kimiko Yamamoto Creator Affiliation National Institute of Agrobiological Sciences Creator Name Jianzhong Wu Creator Affiliation National Institute of Agrobiological Sciences Creator Name Takuji Sasaki* Creator Affiliation National Institute of Agrobiological Sciences
Contact address	2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan National Institute of Agrobiological Sciences Takashi Matsumoto E-mail : Yuichi Katayose E-mail :
Database classification	Plant databases - Rice
Database classification	Sequence PCR-based marker
Organism	Taxonomy Name Oryza sativa Taxonomy ID 4530
Database description	We have developed 332 PCR-based genetic markers including 161 sequence tagged site (STS) markers and 171 cleaved amplified polymorphic sequence (CAPS) markers.This site shows all information for these markers.
Features and manner of utilization of database	The table (chr 1 to chr 12) summarizes all information for STS and CAPS markers, such as chromosomal location, primer sequences, size of amplified fragment (Nipponbare), restriction enzyme, etc. These markers have been developed to detect polymorphism between Nipponbare (japonica) and Kasalath (indica). Although detection of polymorphism of these markers will depend on the combination of varieties or lines, they may be used for the analysis of other combinations. Because this archive has been created based on the following data of the last update date, it may not match the data in the current situation.
License	CC BY-SA Detail
Background and funding	Name Phase 2 of Rice Genome Research Project (1998-2004)
Reference(s)	-
Original website information
Database maintenance site	National Institute of Agrobiological Sciences
URL of the original website	(Suspended)http://rgp.dna.affrc.go.jp/E/publicdata/caps/index.html
Operation start date	2002/02/10
Last update date	2002/02/10
URL of the portal site	http://rgp.dna.affrc.go.jp/E/
Whole data download	-
Referenced database	-
Entry list	Not available
Query search	Not available
Web services	Not available
URL of Web services	-
Need for user registration	Not available