General information of database | |
 Database name | RGP caps |
| Alternative name | RGP: 332 PCR-based genetic markers on rice chromosomes |
| DOI | 10.18908/lsdba.nbdc00318-05-000 |
| Creator | |
| Contact address | 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan |
| Database classification | Plant databases - Rice |
| Database classification | Sequence PCR-based marker |
| Organism | |
| Database description | We have developed 332 PCR-based genetic markers including 161 sequence tagged site (STS) markers and 171 cleaved amplified polymorphic sequence (CAPS) markers.This site shows all information for these markers. |
| Features and manner of utilization of database | The table (chr 1 to chr 12) summarizes all information for STS and CAPS markers, such as chromosomal location, primer sequences, size of amplified fragment (Nipponbare), restriction enzyme, etc. These markers have been developed to detect polymorphism between Nipponbare (japonica) and Kasalath (indica). Although detection of polymorphism of these markers will depend on the combination of varieties or lines, they may be used for the analysis of other combinations. |
| License | CC BY-SA Detail |
| Background and funding | |
| Reference(s) | |
Original website information | |
| Database maintenance site | |
| URL of the original website | (Suspended)http://rgp.dna.affrc.go.jp/E/publicdata/caps/index.html |
| Operation start date | 2002/02/10 |
| Last update date | 2002/02/10 |
| URL of the portal site | http://rgp.dna.affrc.go.jp/E/ |
| Whole data download | - |
| Referenced database | - |
| Entry list | Available |
| Query search | Not available |
| Web services | Not available |
| URL of Web services | - |
| Need for user registration | Not available |
