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Database name DOI Database classification Organism Database description Features and manner of utilization of database Database maintenance site License
Image collection in the Coral Reef Network WEB System 10.18908/lsdba.nbdc02655-000

The Global Oceanographic Data Center (GODAC) collected pictures of marine organisms around the coral reefs in the Ryukyu Islands from citizen divers during 2002 to 2013. GODAC also collected videos through GODAC’s research activities using a small remotely-operated vehicle “Niraikanai 150”. These image collection of the pictures and videos had been published on the website of Coral Reef Network WEB System (http://www.godac.jp/coral/). The image collection can become a valuable snapshot to know a past fauna or flora in the Ryukyu Island. The metadata of images provided to the system is used to extract scientific names and locations (latitude and longitude), which are then organized as biological occurrence records and published in BISMaL, a database for marine biodiversity information (http://www.godac.jamstec.go.jp/bismal/).

・Understanding the geographical distribution of marine organisms
・evaluation or predication for marine biodiversiy

CC BY-SA
DoBISCUIT 10.18908/lsdba.nbdc01145-000
Metabolic and Signaling Pathways
Streptomyces (1883)

DoBISCUIT:is a comprehensive database of secondary metabolite biosynthetic gene clusters (BGC).

Secondary metabolites produced by actinomycetes are important as lead-compounds and/or candidates for drug development. Polyketide synthases (PKSs) and non-ribosomal peptide synthetases (NRPSs) have been attracting much attention for their roles in constructing complex compounds. Secondary metabolite biosynthesis gene clusters (BGCs) are often used in biotechnological applications such as heterologous expression and combinatorial biosynthesis. Many scientific papers are published describing biosynthesis gene clusters every year, but information about a particular gene cluster is often dispersed in many references and is not described in a comprehensive manner.
We constructed a literature-based database about known PKS and NRPS gene clusters. The database consists of biosynthesis cluster information and KS/A domain sequence information. Our database enables easy access to a comprehensive information related to biosynthesis clusters and browsing standardized gene descriptions. Our database will thus serve as a useful reference for the analysis of secondary metabolites and biosynthetic gene clusters.

Biological Resource Center, National Institute for Technology and Evaluation (NBRC)

CC BY
Mutant Panel
(Rice Tos17 Insertion Mutant Database)
10.18908/lsdba.nbdc00229-000.V001
Plant databases - Rice
Oryza sativa (4530)

The Mutant Panel is a database of rice (Nipponbare) Tos17 insertion mutant lines. These lines were created by activation of the endogenous retrotransposon Tos17. This database enables users to search sequences adjacent to the transposon, as well as strain names from the results of PCR screening using a three-dimensional DNA pool.

The Tos17 insertion sites and corresponding phenotypes for each line are organized, allowing for the investigation of the relationship between the disrupted gene caused by the insertion and the resulting phenotype.

National Agriculture and Food Research Organization (NARO)

CC BY-SA
JEDI System/OCEANS DB
(Joint Environmental Data Integration System/Oshima Coastal Environmental data Acquisition Network System database)
10.18908/lsdba.nbdc02629-000.V001
Others (Marine plankton data)
Others (Marine environmental monitoring data)

The physical, chemical, biological and engineering data observed by OCEANS (Oshima Coastal Environmental data Acquisition Network Sysmtem) of JEDI (Joint Environmental Data Integration) System at Habu port of Izu Oshima, Tokyo, Japan, from August 10, 2014 to August 10, 2018. See www2.kaiyodai.ac.jp/~hide/JEDI/ for more information.

Dataset for biodiversity study and prediction model development, Plankton image dataset for classification

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Index to Chromosome numbers in Asteraceae 10.18908/lsdba.nbdc02601-000
Plant databases - Other plants
Alangiaceae (42219)
Alseuosmiaceae (49929)
Argophyllaceae (57707)
Asteraceae (4210)
Calyceraceae (41860)
Campanulaceae (4381)
Carpodetaceae (85554)
Goodeniaceae (16472)
Menyanthaceae (24579)
Pentaphragmataceae (41864)
Phellinaceae (57708)
Rousseaceae (85554)
Stylidiaceae (41865)

The title of Asteraceae “Index to Chromosome numbers in Asteraceae” has been used for the representative of families in Asterales due to the largest and most familiar for many researchers. It is included the published data of all members in whole of Asterales, instead of being restricted to just members of Asteraceae: Alangiaceae, Alseuosmiaceae, Argophyllaceae, Calyceraceae, Campanulaceae, Carpodetaceae, Goodeniaceae, Menyanthaceae, Pentaphragmataceae, Phellinaceae, Rousseaceae, Stylidiaceae (all of them are placed in Asterales at present “2021, December"). This Database includes taxon name, chromosome number (n and 2n), DNA contents, genbank accession numbers (for the nuclear or chloroplast DNA sequences:You can know that taxa used for molecular phylogenetic analyses), habit (life form) and size of plant, reproductive system, collection locality (Nation), Author (s) and the title of paper and published journal names.
  The classification of the Asteraceae (= Compositae) follows on Susanna, A. et al (2020) is followed in this database. Sixteen subfamilies (Barnadesioideae, Famatinanthioideae, Stifftioideae, Mutisioideae, Gochnatioideae, Wunderlichioideae, Hacastocleideideae, Perytyoideae, Tarchonanthoideae, Dicomoideae, Carduoideae, Gymnarrhenoideae, Vernonioideae, Cichorioideae, Corymboideae, Asteroideae.) + 49 tribes + 116 subtribes are included.

CC BY-SA
Database name DOI Database classification Organism Database description Features and manner of utilization of database Database maintenance site License