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| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Data detail |
|---|---|---|---|---|---|---|
| Sequencer table | RPD | 10.18908/lsdba.nbdc00191-003 |
List of result of BLAST search for the amino acid sequence determined by gas-phase protein sequencer. |
Using the amino acid sequence determined by gas-phase protein sequencer as query, BLAST search was performed to NR database restricted to Oryza sativa. This result was obtained by using NR database at Oct. 2013. |
Data detail
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| Spot table | RPD | 10.18908/lsdba.nbdc00191-002 |
List of the spots obtained by 2D-PAGE. The information for each spot such as Mw, pI, expression level, the amino acid sequence, and the result of homology search is provided. |
experiment |
Based on 23 reference maps of 2D-PAGE, each of the proteins was purified and sequenced by gas-phase protein sequencer or mass spectrometry. For amino acid sequence by gas-phase protein sequencer, the result of homology search was obtained by BLAST. For sequence by MS, it was obtained by Mascot analysis. |
Data detail
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| Images | RPSD | 10.18908/lsdba.nbdc00749-002 |
Images of the three-dimensional structures of the proteins of plant seven kinds, such as rice. |
Data detail
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| Main | RPSD | 10.18908/lsdba.nbdc00749-001 |
List of information about the three-dimensional structures of the proteins of plant seven kinds, such as rice. |
Protein Data Bank |
Data detail
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| Alignment | SAHG | 10.18908/lsdba.nbdc01193-004 |
Alignment between target and template sequences |
3D structures was predicted based on the amino acid sequece by our prediction pipeline (Motono et al., Nucleic Acids Research, 2011, 39, D487-D493). |
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Data detail
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| Data name | Database name | DOI | Description of data contents | Data acquisition method | Data analysis method | Data detail |