Search for Data Metadata
| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Data detail |
|---|---|---|---|---|---|---|
| Complex Model Structure | SAHG | 10.18908/lsdba.nbdc01193-007 |
Predicted protein compex structure (PDB format). |
If a target sequence was related to a given subunit of a template complex in PQS database with >=80% sequence identity by the BLAST search and all the other subunits were related to any target sequences, the complex model was constructed by MODELLER. |
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Data detail
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| Complex Modeling | SAHG | 10.18908/lsdba.nbdc01193-003 |
Protein-protein copmlex modeling predition |
If a target sequence was related to a given subunit of a template complex in PQS database with >=80% sequence identity by the BLAST search and all the other subunits were related to any target sequences, the complex model was constructed by MODELLER. |
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Data detail
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| Domain Model Structure | SAHG | 10.18908/lsdba.nbdc01193-006 |
Predicted protein structure (PDB format). |
3D structures, protein-ligand interaction, and protein-protein interaction were predicted based on the amino acid sequece by our prediction pipeline (Motono et al., Nucleic Acids Research, 2011, 39, D487-D493). |
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| Domain Modeling | SAHG | 10.18908/lsdba.nbdc01193-002 |
Predicted structure of the domain, information of the templates, predicted interactions. |
3D structures, protein-ligand interaction, and protein-protein interaction were predicted based on the amino acid sequece by our prediction pipeline (Motono et al., Nucleic Acids Research, 2011, 39, D487-D493). |
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Data detail
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| Model Structure Thumbnail | SAHG | 10.18908/lsdba.nbdc01193-005 |
Still/animated images of the predicted protein domain sturctures. |
The predicted domain structres in PDB format were visualized by a software. When models of both apo and holo forms are available (green block on the bar), their structural changes upon ligand-binding are visualized by the morphing technique (the MORPH2). |
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Data detail
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| Data name | Database name | DOI | Description of data contents | Data acquisition method | Data analysis method | Data detail |