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Showing 371 to 375 of 416 entries
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Data name Database name DOI Description of data contents Data acquisition method Data analysis method Data detail
Complex Model Structure SAHG 10.18908/lsdba.nbdc01193-007

Predicted protein compex structure (PDB format).

If a target sequence was related to a given subunit of a template complex in PQS database with >=80% sequence identity by the BLAST search and all the other subunits were related to any target sequences, the complex model was constructed by MODELLER.

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Data detail open_in_full
Complex Modeling SAHG 10.18908/lsdba.nbdc01193-003

Protein-protein copmlex modeling predition

If a target sequence was related to a given subunit of a template complex in PQS database with >=80% sequence identity by the BLAST search and all the other subunits were related to any target sequences, the complex model was constructed by MODELLER.

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Data detail open_in_full
Domain Model Structure SAHG 10.18908/lsdba.nbdc01193-006

Predicted protein structure (PDB format).

3D structures, protein-ligand interaction, and protein-protein interaction were predicted based on the amino acid sequece by our prediction pipeline (Motono et al., Nucleic Acids Research, 2011, 39, D487-D493).

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Data detail open_in_full
Domain Modeling SAHG 10.18908/lsdba.nbdc01193-002

Predicted structure of the domain, information of the templates, predicted interactions.

3D structures, protein-ligand interaction, and protein-protein interaction were predicted based on the amino acid sequece by our prediction pipeline (Motono et al., Nucleic Acids Research, 2011, 39, D487-D493).

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Data detail open_in_full
Model Structure Thumbnail SAHG 10.18908/lsdba.nbdc01193-005

Still/animated images of the predicted protein domain sturctures.

The predicted domain structres in PDB format were visualized by a software. When models of both apo and holo forms are available (green block on the bar), their structural changes upon ligand-binding are visualized by the morphing technique (the MORPH2).

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Data detail open_in_full
Data name Database name DOI Description of data contents Data acquisition method Data analysis method Data detail