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Data name ⇅	Database name ⇅	DOI ⇅	Description of data contents ⇅	Data file ⇅	Simple search URL ⇅	Data acquisition method ⇅	Data analysis method ⇅	Number of data entries ⇅	Data detail
YAC contig information	RGP physicalmap	10.18908/lsdba.nbdc00318-06-001	YAC contigs on the rice chromosomes	rgp_physicalmap_yac_contigs.zip (1 KB)	http://togodb.biosciencedbc.jp/togodb/view/rgp_physicalmap_yac_contigs#en	The range including YAC contig is shown for each the divided region within the chromosome. DNA marker names are different to those in "YAC clone information". For example, P61 and P0061 represents the same marker. Please refer to the following literature for the acquisition method of YAC clone data. Chromosome 1 : Wang et.al (1996), DNA Research, 3(5): 291-296. Chromosome 2 : Umehara et.al (1997), DNA Research, 4(2): 127-131. Chromosomes 3 and 11 : Tanoue et.al (1997), DNA Research, 4(2): 133-140. Chromosomes 4 and 7 : Koike et.al (1997), DNA Research, 4(1): 27-33. Chromosome 5 : Saji et.al (1996), DNA Research, 3(5): 297-302. Chromosome 6 : Umehara et.al (1996), Genome Research, 6(10): 935-942. Chromosomes 8 and 9 : Antonio et.al (1996), DNA Research, 3(6): 393-400. Chromosomes 10 and 12 : Shimokawa et.al (1996), DNA Research, 3(6): 401-406.		38 entries	Data detail open_in_full
Entire Sequence	RMG	10.18908/lsdba.nbdc00193-002	The data for entire sequence of rice mitochondrial genome with a total length of 490,520bp. This sequence was registered in the International Nucleotide Sequence Database with accession numbers AB076665 and AB076666, and was later combined into a single accession number BA000029. It was also registered in the previous RAP-DB genome browser.	rmg_seq.zip (142 KB)	-	Mitochondrial DNA was prepared as described by Kadowaki et al. (1996), and sequencing of plasmid clones from SauAI or TspEI shotgun libraries was performed using the dideoxy method.		-	Data detail open_in_full
Genes (including RNA editing information)	RMG	10.18908/lsdba.nbdc00193-003	List of genes in the rice mitochondrial genome including information on ORF (open reading frames), transcription and RNA editing.	rmg_gene.zip (3 KB)	http://togodb.biosciencedbc.jp/togodb/view/rmg_gene#en	"Entire Sequence" data in this database	Gene prediction using the tRNAscan-SE, and BLASTN, BLASTX homology search were performed against publicly available DNA databases. The REPuter program was used in the analysis of repetitive sequences.	81 entries	Data detail open_in_full
Genomic Dynamism	RMG	10.18908/lsdba.nbdc00193-007	List of sequences commonly found in mitochondria, plastid and nucleus of rice. The list represents mitochondrial and nuclear sequences with homology and mutations to the plastid sequences. From these results, the movement of plastid sequence fragments into the mitochondria and nucleus can be clarified.	rmg_genomic_dynamism.zip (1 KB)	http://togodb.biosciencedbc.jp/togodb/view/rmg_genomic_dynamism#en			6 entries	Data detail open_in_full
Main data	RMG	10.18908/lsdba.nbdc00193-001	List of data items that are open to the public.	rmg_main.zip (1 KB)	http://togodb.biosciencedbc.jp/togodb/view/rmg_main#en			7 entries	Data detail open_in_full
Data name	Database name	DOI	Description of data contents	Data file	Simple search URL	Data acquisition method	Data analysis method	Number of data entries	Data detail