| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| List of isozyme loci | RGP gmap98 | 10.18908/lsdba.nbdc00318-02-003 |
List of information about a cDNA clone that were mapped in the present high-density linkage map, and that were putatively identified as isozyme genes. |
rgp_gmap98_isozyme_loci.zip
(611 B) |
http://togodb.biosciencedbc.jp/togodb/view/rgp_gmap98_isozyme_loci#en |
The data were acquired by similarity search of the cDNA using the protein database. |
The cDNA inserts were sequenced from the 5' end for 300-400 bp, and were searched for sequence similarities in both the PIR (Rel. 48.0) and SWISS-PROT (Rel. 33) protein databases. The BLOSUM50 matrix was used for scoring similarity. After a similarity search, clones showing the best score with the expected value < 0.0001 were considered as functionally identical clones. And we have selected the ones that hit the isozyme gene in similarity search from Nucleotide sequence of the mapped cDNA. |
15 entries |
Data detail
open_in_full
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| Southern images | RGP gmap98 | 10.18908/lsdba.nbdc00318-02-006 |
Parental Southern hybridization image files. |
rgp_gmap98_southern_image.zip
(69.2 MB) |
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Southern hybridization |
For genotype segregation in F2 plants, Southern hybridization was performed with DNAs digested with the restriction enzymes; BamHI, BglII, EcoRV, HindIII, ApaI, DraI, EcoRI, KpnI. |
3,157 files |
Data detail
open_in_full
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| The linked list of data | RGP gmap98 | 10.18908/lsdba.nbdc00318-02-001 |
List of link information to related data on each chromosome of rice high-density linkage maps. |
rgp_gmap98_main.zip
(355 B) |
http://togodb.biosciencedbc.jp/togodb/view/rgp_gmap98_main#en | 12 entries |
Data detail
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| Insert size of YAC clones | RGP physicalmap | 10.18908/lsdba.nbdc00318-06-003 |
Insert size of YAC clones in the physical map |
rgp_physicalmap_insert_size.zip
(3.4 KB) |
http://togodb.biosciencedbc.jp/togodb/view/rgp_physicalmap_insert_size#en |
YAC size was scaled by Southern hybridization with YAC vector as a probe after gel fractionation using PFGE. YACs are arranged in numerical order. |
962 entries |
Data detail
open_in_full
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| YAC clone information | RGP physicalmap | 10.18908/lsdba.nbdc00318-06-002 |
YAC clones selected with DNA markers |
rgp_physicalmap_yac_clones.zip
(18.7 KB) |
http://togodb.biosciencedbc.jp/togodb/view/rgp_physicalmap_yac_clones#en |
YAC clones selected with RGP DNA markers in each chromosome are listed. DNA marker names are different to those in "YAC contig information". For example, P0061 and P61 represents the same marker.
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1,136 entries |
Data detail
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| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata