| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| SRA | MicrobeDB.jp | 10.18908/lsdba.nbdc01181-006.V002 |
Metadata and taxonomic/functional compositions of 16S rRNA gene-based amplicon sequencing and metagenomic shotgun sequencing samples. Metadata were annotated by several ontologies (i.e., MEO, MSV, and NCBI Taxonomy).
|
sra.tar.gz
(8.4 GB) |
- |
Metadata and DNA sequence data of each 16S rRNA gene-based amplicon sequencing and metagenomic shotgun sequencing sample were obtained from INSDC DRA/ERA/SRA. |
After quality filtering of reads, DNA sequence data of all 16S rRNA gene-based amplicon sequencing and metagenomic shotgun sequencing samples were phylogenetically analyzed by VITCOMIC2. Functional composition of metagenomic shotgun sequencing samples were analyzed by the combination of MetaGeneMark, GHOSTX, and Refsequences database. |
1,926,303,942 triples |
Data detail
open_in_full
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| AntiBody | Mouse Basement Membrane Bodymap | 10.18908/lsdba.nbdc00574-002 |
It is the list of antibodies to stain the target proteins. |
matrixome_antibody.zip
(1.3 KB) |
http://togodb.biosciencedbc.jp/togodb/view/matrixome_antibody | 42 |
Data detail
open_in_full
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| Bodymap | Mouse Basement Membrane Bodymap | 10.18908/lsdba.nbdc00574-003 |
It is the collection of high resolution virtual slides created from gigapixel digital images of mouse embryo.
|
images
(278.6 GB) |
- |
Whole mouse sagittal and head frontal sections were immunohistochemically stained with the antibody against each target protein, and their adjacent sections were stained with hematoxylin/eosin. And they are shown zoomed for each tissue.
|
246 |
Data detail
open_in_full
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| Protein List | Mouse Basement Membrane Bodymap | 10.18908/lsdba.nbdc00574-001 |
It is the list of basement membrane proteins shown in images. |
matrixome_protein.zip
(2.1 KB) |
http://togodb.biosciencedbc.jp/togodb/view/matrixome_protein | 42 |
Data detail
open_in_full
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| def_phenotype | Mutant Panel | 10.18908/lsdba.nbdc00229-002.V001 |
Definition of phenotype. |
tos17_def_phenotype.csv.zip
(1.4 KB) |
https://togodb.biosciencedbc.jp/togodb/view/tos17_def_phenotype#en | 53 |
Data detail
open_in_full
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| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata