ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535454 | A-375
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◣ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

WDR74
GSTA4
COL23A1
FRA10AC1
STX16
MTRNR2L2
MSH3
DHFR
SEMA6A
PHC2
FAM98B
MTRNR2L8
DRG2
DCAF10
DUX4
TATDN3
NSL1
SMARCD2
MTRNR2L1
GBA
EXD1
CHP1
HPCAL1
C17orf75
FAM227B
DTWD1
H4C14
FLOT1
IER3
STX18
TPT1
CDK5RAP1
WDR36
IST1
TRPV2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
SLC5A3
MRPS6
RGPD2
RGPD1
MAN2C1
RAD54L2
TACO1
NUF2
PCID2
CUL4A
BNIP1
DCP1A
ANKRD40
DPY19L4
TRIP4
ZC3HC1
DSTYK
NME1
MTF2
LRRC37A3
INTS12
GSTCD
INPP5F
TMEM242
STX3
WDR31
H2BC21
H2AC21
H2AC20
COMMD2
AURKAIP1
RBBP5
H4C15
FCGR2A
SAR1B
SLC24A1
TMEM256
NLGN2
TPRKB
STAT6
SIRT4
H4C11
EIF2D
ANP32E
NKIRAS1
RPL15
TTC4
SF3A3
SLC25A51
SLC9A1
LRATD2
CTNNB1
PLEKHM3
NFE2L2
TEFM
NDUFS3
KBTBD4
H4C12
TEX46
KDM1A
NDUFC2-KCTD14
NDUFC2
PSMD1
PDE4DIP
H4C3
H1-6
ERCC1
NDUFS7
RPS27
RAB13
GTF2H2
MTBP
MRPL13
ACOT7
KANK1
ACBD6
ATXN7L2
CCDC107
SPRY4
SLC20A1
PEX3
ADAT2
TTC26
H3C13
H2BC18
PHLDA1
TOMM5
LAMP1
ZMPSTE24
S100A6
SERPINE2
HMGB1
USPL1
TMEM107
DMAP1
HEXIM2
VPS45
MRPL40
HIRA
ASB6
NMNAT1
LZIC
SMG8
PIGC
DDIT4
ZNF827
LSM5
RBM28
PIGL
NCOR1
WWOX
AMOTL1
TARS2
POLR3B
XPA
TOR1AIP2
TOR1AIP1
RASSF5
RPS6
WDR70
FRG2C
RPL37
ID1
NR1H3
ACP2
TUBGCP3
ANAPC5
NPM1
CCNL1
JUNB
DRAP1
C11orf68
ADNP
ZBTB45
JRK
RPL3
BTF3
RRP15
ALKBH3
TMEM238
RPL28
ZER1
SRGAP2C
SRGAP2B
USP30
VPS25
CBX5
HNRNPA1
MRPL39
DTX2
E2F6
FBXW11
OPA1
ZNF609
FAM228B
SNRPE
SF3B6
DNAJC25-GNG10
DNAJC25
CT45A10
KCTD5
COX16
LDAH
H2BC11
H2AC11
TFAP2B
RPL9
LIAS
SELENOH
LIG4
AARSD1
ABHD13
SNTB1
EEF1A1
NUFIP2
SLC35A3
PDE8A
SSBP2
SAAL1
SPATA24
GFOD2
EIF3G
RCOR3
SOD2
WTAP
ARL14EP
POLR2C
RFXANK
BORCS8-MEF2B
BORCS8
BTG1
FXYD3
ZNFX1
NOTCH2
DR1
PRKCE
FEM1B
ZNF460
G3BP1
BCL3
ITGB3BP
EFCAB7
SS18
MRPS23
MTERF4
RPS27A
CLHC1
MBTPS2
SLC6A15
RPS3
MTOR
TEX9
RFX7
S100A2
RPS20
NSUN4
PTCD1
CPSF4
OTUD7B
NR4A1
ACY1
CLTC
FCRLB
RICTOR
SOX5
SSBP1
SNRPB2
RPS9
ABHD12
RPL11
NNMT
MRPL21
IGHMBP2
COQ8A
SNRNP70
TUBB3
MC1R
BFSP1
PPP6R1
ERCC6L2
RHBDF1
ZSCAN30
MTMR2
SLC44A1
CGGBP1
ATP5MC2
ACBD3
C3orf38
GTF3C6
KCTD3
MRPL1
NCSTN
COPA
H1-3
AGMO
CT45A7
SAGE1
MRPL24
CDKN2AIPNL
RBM45
PDE11A
H3-2
CCDC200
FRG2
PTPN6
C12orf57
R3HDM2
INHBC
LOXL4
CDCA4
UCHL5
RO60
BCL9
H3C10
H2BC13
H2AC13
MTAP
PYROXD2
BOD1L1
POLDIP3
DNAJC14
SECISBP2L
H3C15
H3C14
H2AC19
H2AC18
STAT3
NDUFA9
AKAP3
MOSMO
PSCA
SLC1A4
ZNF76
STARD13
SERPINA3
PGBD2
PTPRG
SEC13
KIF22
PFKFB4
UCN2
MIS12
DERL2
TOMM20
ADGRL1
LOC100509620
KCNMA1
WDR11
ALG1
POLR3F
DZANK1
WWTR1
MRPL53
MRPL48
QSOX1
H2BC5
H1-4
SQSTM1
RPL32
IFRD2
CDCA3
SCNM1
LYSMD1
TMEM115
CALR3
C19orf44
PHB
TCEA2
SMPD3
CLPB
BOD1
MMACHC
FEM1A
PNKD
AAMP
GSPT1
PAFAH2
ST3GAL2
CHMP4B
NUDCD1
SLC39A1
TSNAXIP1
RANBP10
BTRC
CRTC2
TMTC3
CEP290
PPRC1
AP2S1
KBTBD6
PANK4
HES5
PEMT
AHCYL2
KBTBD7
PRCC
MICOS13
HSD11B1L
DDX23
PPP1R12C
C1orf159
UNK
LARS1
CTU1
INVS
ERP44
PPP1R12B
ZFYVE1
PHF12
VCPIP1
C8orf44-SGK3
ZNF225
H3-3B
NTAN1
TSSC4
MAD2L1BP
GTPBP2
GTF2H4
BANP
SYMPK
FOXA3
ZNF444
TMEM11
ORMDL3
NPRL2
CYB561D2
SLC35B4
SCAF1
RRAS
TNFAIP1
IFT20
FASTKD1
GFUS
UBQLN4
LAMTOR2
SNX17
EIF2B4
RPIA
STAU1
WDPCP
MDH1
SLC4A2
CDK5
ING3
TTC33
TTC13
ARV1
STK25
ABCF2-H2BE1
ABCF2
CCDC146
SUFU
ACTR1A
SCRIB
INTS9
HMBOX1
ZSCAN22
GDE1
CCP110
TLE3
TIMM21
FBXO15
GATB
C16orf91
ZNF749
CHPF2
WNK1
COX7C
EMILIN1
MED15
BOLA1
JOSD2
ASPDH
NOP14
GRK4
ZNF337
UBR2
CLEC16A
DEXI
ZFYVE19
DNAJC17
AP2M1
ODF3L2
TMEM127
CIAO1
TFEB
WDR97
MAF1
TMEM59
TCEANC2
WDR87
SIPA1L3
ZNF56
C19orf53
ZFYVE28
TSC2
NTHL1
SIRT2
NFKBIB
PEX14
DFFA
UBAC1
PHF13
DESI2
TRAPPC3
RPS7
CFAP99
SMARCAL1
VPS50
HEPACAM2
BUB1B
KMT2B
TMEM70
ELOC
RIC8B
CBARP
ATP5F1D
DCAKD
RPL8
FBXO46
TBL3
NMT1
ZNF189
MRPL50
TFPT
PRPF31
SESN1
LRRC29
ING4
DYNC1I2
ZNF34
CTF1
BCL7C
RPGRIP1L
FTO
IPPK
CCDC90B
MEIOSIN
BUB3
PSMD11
EMP3
SEPTIN9
RAB5C
ZNF235
RNF151
SOX6
C11orf58
NDUFS2
ADAMTS4
USP48
ATP5PO
CAPN15
TMEM160
THRAP3
RANGAP1
THYN1
ACAD8
SLC25A19
RAB1A
LETM1
FBXL19
ZNF169
CNIH4
ZNF420
PRRG2
NOSIP
TRAF7
PEX26
OSCAR
NDUFA3
TMEM101
CCAR2
C8orf58
FBXO48
APLF
PDE6D
COPS7B
NUDT13
VIPAS39
AHSA1
TRAK2
STRADB
CCDC150
ZNF224
B3GALNT2
RBL1
ARHGAP9
CHCHD3
RALBP1
MARS1
GPANK1
CSNK2B
CLP1
TTBK1
SNX27
MED23
ZC3H11A
ZBED6
ZNF554
DDX49
COPE
ZNF354A
PTDSS2
RABAC1
ZNF350
KAT7
TMEM102
FGF11
MYLK4
LY6G5B
STK17A
WBP1
INO80B
FAM193A
BIRC5
CLDND1
RPL18A
FAM185A
LMNB2
PANK3
CTDP1
ZNF384
RBM6
GPKOW
PA2G4
SMUG1
NFXL1
TMEM43
CHCHD4
UFSP2
C4orf47
CDK5RAP2
YPEL3
TBX6
UTP11
SERPINI1
PDCD10
ZNF230
UBE2Q1
HTRA2
DQX1
FAM222A
WRNIP1
CCDC174
ZW10
ZNF37A
NUP153
PNPLA6
CNOT4
AKIRIN2
TMEM245
GPAA1
EXOSC4
LTA4H
ZNF133
CNOT1
RPS6KB2
MAMDC2
RPS19
BICD2
ZNF718
HBP1
UBL7
ZNF527
DUS3L
ZNF227
SLMAP
SDCCAG8
CEP170
ZCCHC4
ZNF595
PHF23
GABARAP
WBP2
SLC33A1
C19orf67
POLR2E
ZNF226
C6orf47
FDPS
SNX1
CIAO2A
SPHK2
RPL18
FAM83E
HSPA13
SYPL1
PIGU
NFKBIL1
ATP6V1G2
PSENEN
LIN37
RPS13
MXI1
RALGAPA2
RPS26
PGBD4
EMC7
SEC61A1
DVL2
COMMD9
TIMM13
ZNF2
LUC7L
ZGPAT
ARFRP1
PCM1
PHB2
SCAMP4
ADAT3
CDCA8
C1orf109
NCLN
CFAP410
QTRT2
CCDC191
TMEM143
SYNGR4
INTS1
PTBP1
METTL26
LRFN3
DGAT1
GUSB
RPP40
ZNF32
ZNF547
TRAPPC2B
MTMR9
SPATC1L
TPGS1
ENOX2
TXNDC9
EIF5B
ZNF419
WDR53
FBXO45
AHCTF1
CIC
SEC11C
MED27
TNFRSF12A
THOC6
HCFC1R1
RPL29
GALK2
CAND1
ZNF500
TTC1
SLC17A7
ZCCHC8
GSK3A
ZNF484
PSMD4
PES1
RAB29
SLX1B
SLX1A
BOLA2B
ASXL1
CWC22
DNM1L
FARSA
CALR
TMEM69
GPBP1L1
BOLA2
CDK8
TERF2
ZNF343
WAPL
RPL23A
RAB34
TMEM186
PMM2
AQR
PRR14
TSACC
CCT3
MED11
GINS3
ZNF451
FAM207A
USP35
KCTD21
PSMD2
MRPL20
ZBTB7A
RAB30
IGSF8
UBE2J2
CWC25
NOLC1
MGRN1
MAX
RCAN1
CAPG
NCBP2AS2
NCBP2
PSMC4
DDX47
COPS7A
EIF1B
ZMAT5
UQCR10
GID4
ATPAF2
BOLA2-SMG1P6
UBA52
PSMF1
ALG10B
VAPA
LSG1
ILF3
SSR3
ZMYND10
CDC25C
METTL3
SSR2
ZNF747
KANSL1
ZSCAN32
ZNF174
EML6
PEX12
MUS81
CFL1
SLC38A9
ADSS2
SCAMP3
RPS3A
TRIP10
GPR108
THAP1
TMEM222
WASF1
CDC40
LEMD2
L3MBTL2
USP31
COPS2
KBTBD8
PARL
RPL27
ZNF805
PRKCI
HIRIP3
ZNF17
EXOC4
UTP3
PPP6C
MEN1
GPR137
CLPP
FHIT
ZNF862
ZNF773
POLR2J3
MTR
SUPT4H1
FAM53C
VPS4B
SUGP1
MAU2
GFM1
ZSWIM9
LIG1
TSN
C12orf43
RNASEH2C
ZNF25
NCDN
KIAA0319L
CCND3
RETSAT
ELMOD3
TOR2A
ZNF586
THAP11
NUTF2
CENPT
SASS6
CARS1
ZNF567
NDUFB5
MRPL47
RACGAP1
ZNF140
CSRNP2
PPP1R13L
POLR1G
DPP9
FBH1
ANKRD16
PRKCSH
CCDC151
PSMB4
ESCO2
CCDC25
B4GALT7
TOR1A
ABRAXAS2
RPL22
SKP2
LMBRD2
ARMH3
ZNF277
DOCK4
PSMD3
EIF3C
TMEM199
POLDIP2
ZNF584
CA11
VKORC1
ATP5MF-PTCD1
ATP5MF
EIF3D
SMN2
SMN1
SLC50A1
POLRMT
DPM3
GPT2
EIF3CL
YJU2
ALG10
AKAP8
SERP1
EIF2A
TMEM33
STMN3
RTEL1
N4BP2L2
TRMT1L
SWT1
XPOT
ARHGEF1
ZNF684
DHX8
DEDD
CCDC124
MEA1
TSNAX
ZNF45
VEZT
FGD6
EIF2S2
TUT1
SNAPC3
CIAO3
KATNB1
CNOT6
TMED9
VRK1
CXXC1
IPO7
COPS8
ZNF436
RAB3C
ATP6V0B
TMEM41A
ATP13A1
ZNF165
PSMB6
ZNF628
AP2B1
SKIV2L
SF3B2
NELFE
GAL3ST3
CAPN10
INTS4
NUP205
MRPS18C
HELQ
NOP53
ZNF548
MRPS16
ZNF764
ZNF101
GGPS1
ARID4B
IFRD1
ABT1
WDR46
PFDN6
DHX33
SFXN5
TOMM22
PUM3
CANT1
RPL12
LRSAM1
SCYL3
MRPL54
APBA3
CRK
RAB7A
C1orf54
APH1A
ALKBH8