ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX1637467 | MOLT-4
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◣ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

CDCA3
BTRC
IFRD2
TCEA2
MMACHC
CLPB
TSNAXIP1
RANBP10
TMEM115
AP2S1
SMPD3
GTF2H4
FEM1A
CCM2
PRCC
WDPCP
MDH1
RHEX
CHMP4B
CALR3
C19orf44
NUDCD1
MRPL24
GSPT1
ZFYVE1
ST3GAL2
PKIG
PEMT
PNKD
AAMP
APBA2
MICOS13
HSD11B1L
WDR74
PLCL2
PHB
SCNM1
LYSMD1
PCDH10
BANP
C1orf159
SLC39A1
CRTC2
KBTBD6
AHCYL2
TMEM11
SLC4A2
CDK5
PPRC1
ALDH1A2
ZNF444
STATH
RBL1
ATP2C1
TOX2
PI16
PAFAH2
FRG2C
PPIAL4H
PPIAL4G
RUBCNL
KBTBD7
CYTH1
BOD1
MAD2L1BP
GTPBP2
PHF12
PPP1R16B
EMILIN1
VCPIP1
C8orf44-SGK3
AGBL1
INTS9
HMBOX1
TMTC3
CEP290
ING3
HHIP
CST5
STAU2
DCLK3
IQGAP2
FARSA
CALR
GRAP2
KMT2B
NKAIN4
DSTYK
SHQ1
PANK4
HES5
STK17B
SLC35B4
NPIPB15
BNIP3L
NFE2
NPRL2
CYB561D2
ZMYND10
PARL
INVS
ERP44
CR2
PPP1R12C
BIRC5
SCAF1
RRAS
PPP1R12B
SRPK2
UNK
H3-3B
KCTD9
CDCA2
FBXL19
EMP3
CCDC114
ACADM
CD300A
CHCHD2
WNK1
NFRKB
BAIAP2
DEGS1
VAT1
PPIAL4F
PPIAL4E
PPIAL4D
GATB
TRIB1
ARHGEF7
TSSC4
SSBP1
KANSL1
GNA15
ZNF718
ZNF595
UBR2
POLDIP3
LARS1
NTAN1
FBXW11
C3orf86
GFUS
KRTAP16-1
OR4D1
CCDC146
ZNF225
MND1
FBXO48
APLF
TIMM21
FBXO15
ZNF331
VPS50
HEPACAM2
CAPN15
FASTKD1
CTU1
PSMF1
SLC2A6
COPS4
ZFYVE19
DNAJC17
LTB
LST1
UBQLN4
LAMTOR2
SUFU
ACTR1A
ZNF335
NBEAL2
H2AZ2
FAM222A
CD69
GDE1
CCP110
VIPAS39
AHSA1
DGKA
PYM1
TGM6
RANGAP1
ADA
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
PPAN-P2RY11
PPAN
ANGPTL6
ATP11B
SLC12A6
DDX4
RPS7
SYTL2
TESPA1
GSK3A
PTPN6
C12orf57
SEC14L2
SCGB1C2
SCGB1C1
ODF3
CCAR2
C8orf58
TNFRSF13B
BUB1B
TNFAIP1
IFT20
CXCR4
NSFL1C
TFEB
PHF13
RUFY3
RAB37
STAU1
MED23
CCL1
ITGA6
GFRA4
JOSD2
ASPDH
FXYD2
LZTFL1
LSM4
ATP6V0A1
RIC8B
GZMA
PEX14
DFFA
MDM4
GPKOW
GSR
TJP1
RCSD1
MAP1LC3B2
SYMPK
FOXA3
ABCF2-H2BE1
ABCF2
CHPF2
ZNF337
ZSCAN22
DCAKD
NMT1
SOX6
C11orf58
SOX17
MSL2
EPHX2
ZNF354A
NAPA
TLR9
MX2
TMEM70
ELOC
ABHD12B
AP2M1
CD1A
WDR24
ASB2
STK25
COX7C
DDX23
FAM193A
LAT
RPGRIP1L
FTO
PYGM
CLEC16A
DEXI
TFPT
PRPF31
UBE2J1
DYNC1I2
ZNF133
RPL29
SIRT4
TFAP2E
HSPA13
TAS2R50
DCP1A
SLC47A1
CHCHD3
TMEM59
TCEANC2
DLC1
LDLRAD4
TTI2
APBB1
SYT12
FMNL1
RABAC1
RFX8
MRPL1
NUF2
CCDC90B
MAP3K8
ZNF821
NEIL3
DPP6
ZBTB45
THEMIS
PLAAT5
CDK8
PRRG2
NOSIP
LIMS1
RHCG
UTP3
H6PD
N4BP2L2
PRKD2
CDT1
SLC33A1
PSMD11
ARHGAP9
MARS1
LMO2
NDUFS7
SPATA46
ARHGAP24
TPGS1
DRC7
EPHA1
NUDT13
TES
DUS3L
ITGA4
NET1
SNX17
EIF2B4
TMEM127
CIAO1
FHAD1
LYST
FGR
MTF2
HEMGN
DESI2
PEX3
ADAT2
DBNDD1
FAM185A
FOXP1
TNFRSF1A
MMP9
ATXN7
STK4
HECTD1
NDUFS3
KBTBD4
ORMDL3
PNLIPRP3
PTDSS2
TNPO3
THYN1
ACAD8
SNAPC3
SLA
AURKAIP1
TTC13
ARV1
RPIA
TMEM107
ZNF500
FAM3B
C19orf53
MRPS31
RETNLB
FNTB
CCNG2
TMEM245
GCSAM
ZNF784
SMARCAL1
IPO4
REPIN1
ERAP1
TOR1AIP2
TOR1AIP1
ALDH3B2
FBXO46
MEIOSIN
BUB3
GP5
ZNF165
TTBK1
SMAD7
AAR2
PLK1
FIGNL2
PEX26
ASXL1
ATAD2
ABTB2
ZSCAN5A
DHX33
LGMN
SNRPD3
GUCD1
NME1
CSTA
RCAN1
TSC2
NTHL1
RAB1A
FAM228B
SF3B6
TRAFD1
CDK5RAP3
TSC1
GFI1B
CBFA2T3
RGL4
RLN1
NSMF
MRPL44
TLR6
SERHL2
PHF19
PTCRA
SIRT2
NFKBIB
LIMS4
CXorf49B
CXorf49
ZW10
ZMAT5
UQCR10
CHST12
DHRS11
BICD2
SCML4
TNFRSF4
PVRIG
PALLD
ADD3
CCDC150
FCGR2A
CD1B
RBM6
PHF23
GABARAP
DVL2
LAIR1
AFF3
FRG2
CDK5RAP1
YPEL3
TBX6
BORCS7
TLE3
INTS12
GSTCD
STAP1
SPC25
TTC33
FOXN1
IDNK
MED15
PANK3
GATA2
CDK5RAP2
GFM2
STARD10
REXO4
ADAMTS13
RASAL3
AOAH
RALGAPA2
DUX4
C16orf91
ZNF354C
THBS4
CFAP20
WDR87
SIPA1L3
IFIT3
UBAC1
USP48
SF3A3
FAM168A
LEF1
ADAMTS1
ZNF343
SMCO1
RAB5C
TMEM222
LCK
EVPL
MFAP4
SCRIB
ZNF56
NCLN
TLE4
NOP14
GRK4
LIG4
PEAK1
HMG20A
MBNL1
KCNA2
AFF1
CYB561
PEX5L
ZCCHC8
PRPF40B
HRH2
RIPK4
TRAPPC3
CCNI
LETM1
ZGPAT
ARFRP1
MEN1
RTN4
HIPK1
THRAP3
PRKCI
PTK2
STMN3
RTEL1
LRIG1
KLHL20
EPSTI1
IFNB1
TRAF4
TMEM160
GGA2
ZNF749
ICAM2
HDAC7
DPY19L4
RBBP5
ADAD2
ZNF354B
ARHGEF3
CISD3
MYO1G
FLT1
ZFYVE28
CFAP99
AQP3
NR1H2
GTF3C2
PDE6D
COPS7B
PIGU
TMEM143
SYNGR4
TMEM102
FGF11
PNPLA6
CWC22
TRIP4
C17orf75
ETV3
FAM207A
ZSWIM9
LIG1
ZNF140
ATP13A1
ZNF101
CASS4
MYLK4
VPS25
RPS20
USP30
NIBAN3
ZNF563
GCNT1
ATL2
MAIP1
PLCG1
WBP2
WDR36
D2HGDH
RBM28
H4C12
BCL3
TMEM258
FEN1
RPL18A
ZNF230
OR10T2
CLDND1
CAPG
BRF2
BOLA1
VOPP1
CANT1
RPS13
TACO1
SYTL3
ACSF3
CNOT4
TCF3
BHLHE23
ERGIC1
PRDM1
GALK2
COPS2
THAP11
NUTF2
CENPT
SUPT7L
SLC4A1AP
TRAT1
JRK
ZNF408
ARHGAP1
SMO
TTF1
MRPL30
MITD1
ARID3B
ZNF169
NUMA1
LRTOMT
SWI5
GOLGA2
TRAF3IP3
AGPAT3
ZNF527
MTRNR2L1
GPANK1
CSNK2B
LY6G5B
C6orf47
SNX1
CIAO2A
EIF3F
SNRPB
TRAF7
DGAT1
MFSD2B
OGN
RPS26
KRR1
MAMSTR
TBC1D21
ZFYVE21
XRCC3
COMMD2
UBE3C
RBM38
WIPF1
KIAA0408
KCTD5
CLTC
NANOS3
ASAP1
NUCB2
MZB1
RUVBL1
ADARB1
ORAI2
TMEM163
TMEM101
SDHAF3
ARMH3
ADORA2A
AGK
YJU2
C12orf43
MRPL39
LTA4H
ALG10
NFKBIZ
PA2G4
ZNF570
ZNF569
BTN3A2
PLAGL1
S100Z
MRPS18C
HELQ
MFSD3
GPT
L3MBTL2
STAT4
TRIM47
STX18
ATP5PO
OSBPL5
IL23R
ZMPSTE24
NOP16
HIGD2A
ITGB3BP
EFCAB7
CASP8
RPL23A
RAB34
GTPBP3
ANO8
S100A6
PTPN3
S100A4
S100A5
NCOR2
ALG10B
SUPT4H1
TBC1D19
TUT1
SH3BP5
ZNF226
ESCO2
CCDC25
TOX
WDR46
PFDN6
IL17RA
DEK
CLMP
CXXC5
ADGRE1
MLEC
ARHGEF1
SAR1B
TMC6
TMC8
ATP2A3
AKIRIN2
ENOX2
COX16
GPR160
MKRN3
CACNA2D4
SUGP1
MAU2
ZCCHC4
CPPED1
XPNPEP2
ZNF420
SEL1L
TOP3B
SLC7A8
GTF3C3
LPAR6
LRRC29
TULP2
NUCB1
WDR83OS
WDR83
MAN2B1
SIT1
YIPF2
TIMM29
FBLN2
DDX49
COPE
CIC
DHX8
TGFBR2
SNIP1
DNALI1
SH2D3C
MTOR
AP1G1
CCDC88B
HEXIM2
SMG8
ASNS
CD82
DEF6
ADGRG1
NUP54
LMNB2
LSG1
TMEM242
ZNF235
ANAPC5
GPAA1
EXOSC4
NPY4R
NPY4R2
HBP1
GTSE1
ZBED4
ING4
ARHGEF2
BPI
LIME1
RSAD2
B3GALNT2
FNDC11
SLC17A7
PIH1D2
NKAPD1
CNN2
BCL9
RTTN
UBC
CCND3
TAF8
GUK1
CBARP
ATP5F1D
C19orf67
RAPGEF1
EVL
MAX
MSH5
CLIC1
GRK6
ZNF329
POMT1
ZP1
ANKRD40
ARHGAP4
PPP1R18
FMO1
ZNF227
CST7
DGKZ
ST8SIA4
ASPRV1
NDUFB3
FAM126B
ITGAL
CTF1
BCL7C
CTDP1
MGRN1
PPIP5K2
TMEM178A
SMARCA2
CMTM1
RPP40
CCDC200
VKORC1
UBE3B
KCTD10
SPHK2
RPL18
FAM83E
HUS1
DNAJB4
PCNP
MYO18A
CHMP7
GOLGA3
SETMAR
VPREB1
MRPS16
MRPL16
TEFM
MTBP
MRPL13
SDE2
LNPEP
THOC2
KAT7
SMUG1
CA11
ZNF175
TM7SF3
LAX1
HERPUD1
CALM2
SEC13
SLC39A3
AKNA
DENND2D
WASF1
CDC40
EMSY
ARHGAP45
TMEM229B
SSH2
ZNF277
DOCK4
PPP5D1
CALM3
SLFN12
FIS1
PTPN22
AQR
GAS7
B3GNT3
DNM1L
MTA3
RAB29
NPVF
CNIH4
UCK1
IQGAP3
MAP3K7CL
NEDD8-MDP1
NEDD8
GMPR2
TMEM123
METTL26
BMS1
MCRIP2
SLC25A19
BUB1
CCPG1
C15orf65
IFNA1
ODF3L2
RORC
LRFN3
ZC3H6
PDE4B
RNF166
TRUB2
COQ4
BLK
LTN1
TTC4
CALM1
ZNF224
STK16
GLB1L
GNG12
AHCTF1
KIF15
KIAA1143
IZUMO1
RASIP1
ETFDH
C4orf46
ZC3HC1
PPP2R5B
RNF125
MTMR9
SASS6
C16orf54
CDCA8
C1orf109
ZBTB7B
ZNF850
ARHGAP19
VRK1
GRHL3
TMIGD1
SNAP47
JMJD4
SBF1
CDH23
SNX16
ZNF605
CTHRC1
ASIP
KMT2D
FCRLB
SOAT2
COL6A2
DLX5
NUP153
USP44
MRPL3
ZNF688
GTF3C5
NKD1
NOTCH3
ARHGEF18
NMT2
PPARG
ARL5C
TMEM43
CHCHD4
SELENOH
ZNF436
MYL6B
HDAC9
TBL3
RNF151
RAB27B
RRP15
CLN3
APOBR
WDR97
MAF1
TARBP2
MAP3K12
RNF220
PIK3CG
SEPTIN9
DMAP1
H4C11
NCR2
ELFN2
CLP1
TXNDC9
EIF5B
ZDHHC14
SMIM33
MUS81
CFL1
NR1H3
ACP2
ABCG1
DDX1
MICAL1
TTC39C
KCNQ1
TBC1D31