ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX2375362 | MV-4-11
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◣ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

NLRP12
FRG2C
NFKB2
CDCA3
LAMP1
GATA4
CMPK2
WDFY3
MTRNR2L1
SPATC1
ABT1
PLSCR1
WDR74
PGK1
STEAP4
OR10J1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
PDLIM2
GSTA4
CALR3
C19orf44
XRCC5
BOD1
NIBAN3
IFRD2
GPAA1
EXOSC4
FEM1A
SCNM1
LYSMD1
H4C11
FRG2
ZNF444
SMPD3
DUX4
KLF2
CTTN
PPIAL4H
PPIAL4G
GSPT1
RPS19
CHMP4B
SEMA4B
H4C12
SLC18A2
RNF149
DCP1A
SPDYE13
SCAF1
RRAS
DMWD
UBXN8
NUDT4B
NUDT4
PEX3
ADAT2
NUDCD1
DCAF12
DYNC2H1
SLC12A6
NOP10
NUTM1
KBTBD6
SORBS3
MICOS13
HSD11B1L
DDX58
TMEM243
NDUFS7
GBA
NBN
MEF2C
FBXW4
CCL26
CYTH4
NBEAL2
ZNF221
EXD1
CHP1
BCL3
MTF2
ZCCHC4
CSF1R
SH3BP2
DNAJC5B
JRK
DPY19L4
PANK4
HES5
PNKD
AAMP
TOR1AIP2
TOR1AIP1
NDFIP2
MED23
PPP1R12C
TSSC4
MTMR9
ARHGEF1
MTIF2
PAFAH2
INTS9
HMBOX1
SIGLEC1
GPBAR1
TMTC3
CEP290
GRPEL2
TSNAXIP1
RANBP10
KBTBD7
APOL6
ZBTB45
POMP
H2BU1
H2AW
TYROBP
ZC3HAV1
PGBD4
EMC7
CLPB
H4C14
H4C15
PEX12
CD1A
ST3GAL2
GTF2H2
GNG2
TRPV4
C1orf159
CYP4V2
JOSD2
ASPDH
SLC1A5
TLR4
TBPL1
RPS20
PRR5
ZNF554
TPRKB
MAPKAPK3
CISH
FBXW11
CCAR2
C8orf58
IL1B
SLC25A10
IL7R
ZC3H6
LRRC37A3
VAV1
ARID5A
PEMT
BANK1
ZNF718
ZNF595
USP3
KMT2B
GLRX
FAM207A
TMEM104
NAT9
CD33
RIPK1
TMBIM4
PPP5D1
CALM3
HPSE2
HSH2D
NUF2
MRPS31
SLC39A13
H3C13
H2BC18
MS4A3
BTRC
DRG2
KANSL3
FER1L5
SYMPK
FOXA3
SF3A3
SSBP2
VCPIP1
C8orf44-SGK3
DOCK8
TMEM115
FRG1
AURKAIP1
TIMM21
FBXO15
FAM227B
DTWD1
ADAM28
MEFV
CTU1
PTK2
FRA10AC1
COL8A2
ICAM1
TMEM91
B9D2
MRPS18C
HELQ
TRDMT1
BORCS7
PLEKHM3
RBCK1
AP2S1
IPPK
SIGLEC9
ZNF76
ODF3L2
MINDY3
RNF220
RAB24
PRELID1
ZSCAN22
CCDC9
PPP6R1
PRKCE
TCEA2
NR3C1
BAZ1A
FLT3
A2M
CES1
ABCF2-H2BE1
ABCF2
CHPF2
HIBCH
OLFML2B
SSBP1
ARPC3
EXOC3L1
E2F4
SLC24A1
LCMT2
ADAL
EXT1
ARHGAP25
UNC45A
HDDC3
TAL1
INO80D
WNT2B
H2BC5
H1-4
MRPL24
ZNF175
TMEM222
SCRIB
THAP1
CCDC200
H4C3
H1-6
SPPL2A
ANKRD40
SPATA24
IPCEF1
LTBR
ITGA4
TMEM68
TGS1
LRRC59
CHMP7
TLE6
DDX23
GHRL
BECN1
LARS1
GTF2H3
EIF2B1
GNB4
CXCL1
MMACHC
POLRMT
PROS1
RPL29
RMDN2
DNAJC10
POLE4
ZNF333
DENND4B
ZNF780A
RASA1
ARID3B
TAF1B
CHCHD5
CBX1
SNX11
DRAP1
C11orf68
VPS13B
GFUS
TMEM11
MRPL34
DDA1
JMJD1C
ABHD8
CEBPD
TOMM22
BNC2
NSMAF
ASGR2
SNX17
EIF2B4
KEAP1
C19orf84
RRM2B
PPRC1
SIRT2
NFKBIB
FAM228B
SF3B6
LRFN3
NDUFS3
KBTBD4
TRIM41
POLR2J3
RNPEP
RPS3
NEDD9
MAPK1IP1L
EIF2D
MRPL30
MITD1
ZNF148
ZC3H3
ANXA2R
APPL2
FUT10
ITGB2
ANKRD18B
NSFL1C
H1-2
SLTM
ZFAT
XCR1
RUBCNL
INVS
ERP44
ELOB
ZFP64
KASH5
H4C4
H2BC6
BRF2
RMND1
ARMT1
ADGRE1
CCPG1
C15orf65
RPS15
DR1
ALDOA
ZNF180
ATP5MPL
INO80C
RAC2
GNA11
TMEM39A
POGLUT1
SAT1
MRPS28
TNFAIP1
IFT20
FBXL19
MAPKBP1
TTC33
COX18
PSMF1
INTS12
GSTCD
DNAJC11
LTB4R
LTB4R2
CIDEB
PEAK3
PPIAL4F
PPIAL4E
PPIAL4D
OPA1
ZNF286A
ZNF410
RGS12
FOLR2
UCHL5
RO60
HMGB1
USPL1
TIMM10
SNUPN
FLOT1
CD1C
IER3
SMC6
GEN1
LILRA2
SIRT6
ANKRD24
AARS2
ADAP1
CHD1L
PRKAB2
MOB4
EFCAB2
NOTCH2
LMO2
PHB
ZFYVE1
RPL27
NTAN1
ZNF749
SEC14L1
GTF3C6
FNTA
RHOT2
DPY19L3
CLDND1
SLC44A1
RPL5
TSC1
GFI1B
NCBP3
PRKD2
FBXW7
WDR55
CYRIB
ZAR1L
BRCA2
REXO1
DSCC1
ZNF350
C6orf89
TMEM242
GPR68
ASNSD1
ASDURF
RALB
PSMA8
ADGB
RPS6KA1
TBL2
RASSF2
CTSG
WDR87
SIPA1L3
TMEM229B
TP53I11
POR
AP3M2
TRIM25
CNN1
HIF1AN
RAD23A
HNRNPUL1
PIP4K2B
RBM28
SPRED2
NPY4R
NPY4R2
CCDC124
CFAP298-TCP10L
CFAP298
ACTRT3
TRIM44
NDUFB7
TSSK6
NDUFA13
INTS10
SDSL
ZNF225
ARHGEF18
PCM1
KMT2A
RFESD
REX1BD
DNAJB2
RPP38
AP1B1
ENOSF1
CEACAM21
RASSF5
FZD1
RNF125
AP2B1
REEP3
ERMARD
TMEM123
TSC2
NTHL1
LRRC29
C19orf67
VSIR
DHX8
MRPL44
SNRNP200
H3C8
H2BC10
OBI1
HCK
ARMH3
KCNK9
PRRG2
NOSIP
PA2G4
COPS7A
RUNX1
SIRT1
BLOC1S5
SDHAF3
TRAM1
YES1
CCER2
PNPLA6
POLR3B
RSU1
C1orf53
PIK3CG
SLC35E2A
SGF29
TSG101
TFPT
PRPF31
NCLN
RSAD1
MARCHF7
EDDM13
SLC33A1
DGAT1
PARK7
ERICH4
DMAC2
DCLRE1B
AP4B1
KCTD18
SMPD1
ANKRD46
CCDC152
PPP2R2B
HEXIM2
LTB
LST1
NOTCH1
H4C7
H3C7
H2BC9
PLEKHG3
RRS1
ADHFE1
PPP1R18
NFE2
UBIAD1
BRWD1
HMOX1
PGBD2
RPIA
SLC4A2
CDK5
EMP3
NUP54
TEFM
CCDC114
RCOR3
BID
RAB4B
MIA
SVBP
ERMAP
EXOSC3
ECSIT
HINT3
ZNF557
NFKBIA
MTRNR2L6
UNK
H3-3B
RPS7
ZNF226
CCDC97
INPP5D
LRG1
TRAK2
STRADB
MDM4
GTF2A2
AHCYL2
UTP3
TRIB1
TSPAN10
NPLOC4
ZSCAN30
MRPS23
PSMA1
ATXN2
CAPN15
PISD
H4C1
H3C1
H1-1
H1-5
H2AC16
TRIP4
WASHC4
CIPC
HSPE1-MOB4
HSPE1
HSPD1
PRICKLE4
FRS3
TXNDC15
LSM14A
RMDN1
MYC
SYNE3
CPQ
CRH
PPP1R12B
DSTYK
H4C9
MAP1S
WDR41
MCOLN1
GARS1
RFC2
TEX22
CLPP
MACROH2A1
FKBP1A
SNRPB
DISC1
PEX2
STON2
ZNF227
MRPL3
RAD54L2
THOC3
MAIP1
NEUROG3
SLC39A1
CRTC2
CCDC150
LYNX1-SLURP2
LYNX1
RBM17
HENMT1
THEM4
BIRC2
HIGD2B
BBS4
MRPL1
TRIM35
PTK2B
EEF2
POLR2M
MYO18A
GAS6
GTF2H2C_2
GTF2H2C
LONP1
CATSPERD
C8orf33
CDKN2AIPNL
HUS1
POLR3D
CCDC88A
ANKRD13D
ZNF235
PDE6D
COPS7B
SEC13
MRPL16
PPIL2
SCGB1C2
SCGB1C1
ZNF623
ZNF558
EIF4G3
RYK
C16orf91
STOML1
PML
FIGNL2
SUN1
APBB1IP
STING1
PIK3AP1
SLC35B4
H2BC21
H2AC21
H2AC20
TLN1
CREB3
H3C3
H2BC3
MAK16
FEM1B
DHRS7B
GSK3A
CAPNS1
SOX6
C11orf58
CTDP1
MRPL21
IGHMBP2
PLD3
C19orf47
MAN2C1
B3GAT3
MED4
GABPB1
SCAMP1
OLFML3
CAPG
PDSS1
SYCE2
PRCC
EMILIN1
CCND3
METTL25
CCDC59
YARS1
S100PBP
CLK3
ARHGDIB
NCF2
IRF9
IL1RN
POGLUT3
CDK5RAP1
C10orf88
AVEN
SERPINE1
SIGLEC6
TMEM70
ELOC
BRIX1
USP15
FAM3C
SMAD5
QSER1
PECAM1
STK25
POLG
NINJ2
TNFRSF10A
ZNF512
ATG16L1
ZNF331
MFSD3
GPT
H2BC11
H2AC11
UPF1
SPHK2
RPL18
FAM83E
LUC7L2
GABPB2
FMC1-LUC7L2
FMC1
IQGAP2
TATDN1
NDUFB9
BSG
TEX44
ERLIN2
NME7
BLZF1
TIMM50
FRAT1
UBLCP1
RAD52
REXO4
ADAMTS13
CRBN
JAK3
RCBTB2
ZNF56
AQR
VKORC1
STAT1
PPP1R8
PSMD9
HPD
MEIG1
DCLRE1C
ELAC1
ZFYVE19
DNAJC17
RUVBL1
POMZP3
DDX18
TCF3
EEFSEC
STPG3
NELFB
SLC25A32
DCAF13
RPL37A
CAMKK1
CA13
LCE3A
SUPT4H1
MRPL38
TBL3
RNF151
SH2B1
TUFM
TACO1
WDR70
VIRMA
ZKSCAN8
S100A13
CHTOP
NDRG1
H3C11
TNNI2
FASTKD1
B4GALT7
TMEM147
RNF6
STYK1
UBA52
SELENOH
KMT2D
CAB39
MRPS35
VPS16
PCED1A
RPRD2
TARS3
STAB1
RPL8
ZNF34
PPP1R11
TCF12
ALOX5AP
TRIM28
TMEM41A
TTC14
USE1
TRMT1
NACC1
RNPS1
ATXN7L2
TM6SF1
UBR2
PSMD11
SNAP47
JMJD4
THAP12
GVQW3
RAD50
ACTR3
REPS1
SELENOT
ORMDL3
CCNT1
SMARCD2
IPO11
TRMO
DST
BEND6
ASPHD2
ARHGAP4
WDR82
RIC8B
EIF1B
GFM2
KLHL20
DDX1
ADAR
SMIM20
MTPN
LUZP6
IRF2
INSC
LSG1
ZSWIM9
LIG1
RANBP1
TRMT2A
MRPS33
RPS16
EIF3G
PSMB7
ORC2
PARP2
UBA2
RAB39A
FADS2
FADS1
RPS3A
ZNF567
SNRPD1
CARD8
C5orf51
WASHC5
NSMCE2
MFSD10
SFT2D3
STOM
VPS50
HEPACAM2
BICD2
MRPS15
UHRF2
EVPL
TNIP2
CCR1
STX3
P2RY14
SEC11C
TERF2
NCBP2AS2
NCBP2
TVP23B
UBE2F
EMB
RAVER1
CNTRL
NCF1
NREP
NPRL2
CYB561D2
ZMYND10
MTBP
MRPL13
STAP1
ZNF594
KMT2C
TRIM13
CCDC90B
TOR1B
SUGCT
MPLKIP
MYO9B
HAUS8
MMAA
CCR5
CBWD5
CBWD3
CATSPERG
FAM89B
ZNRD2
PTEN
KLLN
IDNK
HDDC2
CGAS
RBIS
MLNR
EHBP1L1
ATP13A1
ZNF101
C17orf75
EXOSC9
IL16
TCF4
ERMP1
CCDC149
TEKT2
ADPRS
IPO4
LDAH
DNAJB12
RPL26L1
GOLGA3
CSPP1
COPS5
CELF1
ZC3H4
FGGY
KAZALD1
CLEC4G
PPM1M
COPS8
RPS8
PRR19
PAFAH1B3
RALBP1
TSN
COMMD1
CCT4
SAR1B
ZCWPW2
AZI2
SUGT1
MEMO1
ZNF2
PRKCSH
CCDC151
TARBP2
MAP3K12
LMBR1
RARS1