ChIP-Atlas: Target genes

Potential target genes for SMAD4

Query protein: SMAD4
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX064483 | hESC H9
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
SMAD4's Target genes

◢ SMAD4: Average

◢ SRX702096: hESC derived ectodermal cells

◢ SRX064492: hESC derived mesendodermal cells

◢ SRX702093: hESC derived mesendodermal cells

◢ SRX702094: hESC derived mesendodermal cells

◢ SRX702095: hESC derived mesendodermal cells

◢ SRX702097: hESC derived mesendodermal cells

◣ SRX064483: hESC H9

◢ SRX702092: hESC HUES64

◢ SRX6957398: HGrC1

◢ SRX6957399: HGrC1

◢ SRX6957405: HGrC1

◢ SRX6957408: HGrC1

◢ SRX6957409: HGrC1

◢ SRX6957410: HGrC1

◢ SRX6957411: HGrC1

◢ SRX6957485: HGrC1

◢ SRX6957490: HGrC1

◢ SRX6957478: KGN

◢ SRX6957482: KGN

◢ SRX366172: NCI-H441

◢ SRX366173: NCI-H441

◢ SMAD4: STRING

PMEPA1
NODAL
PITX2
ZNF664-RFLNA
ZNF664
CCDC92
SLC7A5
ID2
LEFTY2
NPM3
FGF8
CAV1
PRKAB2
CHD1L
SNX18
ZNF148
SKIL
PLAGL1
COPS8
STOX2
SLC6A15
PMF1-BGLAP
PMF1
AGO1
ID1
SMAD7
LEFTY1
FBRS
POU5F1
MTRNR2L2
MSH3
DHFR
NEURL1B
BMPR2
GAS2L1
SPACA6
NPFFR2
WDR74
WNT3
BCL11A
MRI1
EOMES
ALDH7A1
STAM2
MDN1
KLF10
FAM20C
OLFM2
CEMIP
ASIC1
SMAD3
POU2F3
FAM178B
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
PPP2R2A
SUPT6H
SDF2
CHST11
ZNF853
ZSWIM4
UNC45B
MUC3A
NPAS4
LARS2
SETD1B
ETS1
BUD13
NOCT
SREBF1
ZSWIM7
TTC19
LRP6
RNF32
DPPA4
NOTCH3
KAT6A
FOXJ3
LDLRAD4
LRRC37A3
MARCHF3
ADAMTS5
MLLT11
CDC42SE1
DRAP1
C11orf68
GRIK2
MTIF2
TAF13
FAM184A
CALD1
OCA2
GAD1
TULP4
MAP7
GALNT9
MARCHF5
CPEB3
HOXB13
CER1
NUF2
MTRNR2L1
MTRNR2L8
EP400
NEDD4L
GAB1
JMJD1C
CHD2
CCDC200
RPRM
LMLN2
CYB561
CD8A
DCAF10
DST
RCBTB2
CD101
ABLIM1
MTHFD1L
USPL1
HMGB1
PTGS2
ESRP1
ANKRD46
ATP9B
CCDC88A
MAMDC2
HDGF
UGT1A3
MMP9
NSUN6
BAMBI
GNB2
PCK2
NRL
RET
UTS2B
NOTCH2
CCDC50
UAP1
RAPH1
LRRC59
EML1
WWC2
SNX14
PNMA1
TBC1D5
WT1
TEAD4
PLPPR3
SMAP1
GNL2
MRPS36
DNAJC6
PMAIP1
ZNF609
PTPN18
OAZ1
SLC20A1
GRM1
ARL4A
E2F3
GPR180
SMIM8
VANGL2
PCCA
NTM
TBX22
BOD1L1
ERCC1
ID3
MIPOL1
MAML3
COPS7B
ATXN7L2
FAM168A
HTR5A
GIT1
ANKRD13B
AFF1
TRDMT1
TFAP2A
HINT3
USP47
ZC3H7B
RANGAP1
NFIA
RCAN3
C3orf52
KANSL1L
RNF213
ZFYVE16
JDP2
DGAT2
RGPD8
RGPD5
RGPD6
BAZ2A
CGB3
EPB41L4A
P2RY2
XKR7
WDFY1
LHB
KHK
SLCO5A1
RAB23
OR6J1
NCOA3
EPN1
ZNF521
USP15
LHX1
SAR1B
IKZF5
ACADSB
PCDHAC1
FEM1C
CNOT3
FDXACB1
C11orf1
ZNF775
RRP8
MTDH
ILK
ASCC3
ROR2
LOC100287896
LIPT2
KDM5B
FBXL12
C4orf36
LEMD3
SRF
LSM14A
CBWD6
CBWD5
CBWD3
SOWAHC
SEPTIN10
PARL
TLE1
SHISA8
NARF
MARCHF4
FAM227B
DTWD1
CYBC1
BCL6
RNF103
TLCD5
MMP24OS
MMP24-AS1-EDEM2
SMPD4
MZT2B
MRPL39
IQSEC3
GGT7
AMOTL1
ACSS2
PDE4DIP
NRSN1
GTF2H2
GADD45G
TSPAN12
PXK
RNF11
PPT1
IGF2BP3
FAM162A
CCDC58
REEP5
MEX3B
MCOLN1
KIF2C
FRG2
MTRNR2L9
FRA10AC1
XPO5
SEC22B
POLH
NCOA5
TTC39B
TNPO1
BCAP31
ABCD1
PRC1
TMEM121B
SYNJ1
REST
C9orf40
LRP12
CDH15
MNAT1
MAST4
SLC44A1
TCEAL8
SLC4A9
RNF6
MFAP3L
AVPR1B
LPCAT3
NCOR2
IFT52
NTMT1
ZBTB45
TMEM215
LRCH1
E2F2
C9orf50
USP37
NMRAL1
HMOX2
ERLEC1
CPNE4
CNOT9
ASB3
ACSL3
MYO6
CTNNB1
OCIAD2
ZNF395
TBPL1
PPY
MRGPRG
LRAT
KLHL18
KIF9
ERI1
DCP1A
STX16
CDKN2AIPNL
CASP3
BCR
ZNF341
ARHGAP28
ZNF839
TPI1
SPSB2
OR8B3
FAT1
EXOC2
CHST13
BAIAP2L2
TMEM250
PIGO
PICK1
TCF7L1
PTBP2
POLE3
PDE1C
CEMIP2
C9orf43
AQP2
AGO3
ROR1
HEXB
PDE4B
NAV2
GTF2H2C
GTF2H2C_2
FOSL2
EXD1
ERBIN
CHP1
CERCAM
ARHGAP26
GLRA3
TUBB
NFE2L3
MDC1
EIF2B2
CCNH
BMF
ZDHHC23
TBCK
RTN4
PPIH
LTF
GARS1
AIMP1
SLC1A1
USP42
NTSR2
LOC728392
HTR1E
CRBN
CPVL
CHN2
CXCR5
LAMC2
PCBP1
ZCWPW2
NUDT2
METAP2
ERMP1
DDIT4
AZI2
WBP1L
MOB4
SEC22A
KIAA1841
ANKRD18A
VCAN
ITGB1
HDAC2
FAM153B
GADD45B
FABP6
TFAP2D
RWDD1
MRM3
IQGAP2
GRID2
GLOD4
EFHD1
CAMSAP2
TMEM132A
OR1E3
NGFR
KLF17
C1GALT1C1L
TNFRSF12A
CLDN6
BHLHE40
BPTF
SOCS2
POLR3E
DESI2
AAR2
TMEM170A
SHF
NCBP3
LAYN
FCHO2
CFAP161
B3GLCT
ATP23
BRIX1
USP53
ZNF354A
ULK2
RFX4
PRMT9
IFNGR1
EIF4G1
AK3
MRPL2
KLC4
ZNF654
ZFHX3
OXTR
DNAJC10
CGGBP1
DUX4
FGF1
TXNL4A
TUT7
RNASE10
KIFC3
LIMK2
UCHL1
RFESD
NPIPB9
MEIG1
FGF19
CCDC107
UBA1
TTC9
SEC62
ELMO1
SDHA
OPRM1
NLGN1
MANEA
GGH
GDF7
FNBP1L
CCDC127
C12orf42
VPS28
TEFM
PRKAA1
PRDM8
NDRG2
HMGN2
HBEGF
GTF2A1L
DHRS13
BTC
ARHGEF40
AKAP12
KBTBD2
GLIPR1L1
CAPS2
FXR1
STMN1
RPGR
NXPE3
NIT2
MTARC2
GNAS
EPCAM
ARL6IP1
MED23
GTF3C3
SCOC
HABP4
XYLB
ST6GAL1
SLC24A1
GABRG3
ZNHIT3
ZNF165
OSBP2
MDFIC
MAP2K1
HECTD1
CYP26B1
C12orf73
ANKK1
SLC9A1
BAIAP2
PIK3R3
SMIM10L1
SLC35E2B
PRH1-TAS2R14
PRH1
PDE8A
MKX
MAPK15
HEY2
SLC39A6
RUBCN
LLPH
FYTTD1
FAM177A1
ELP2
UBE2B
CDKL3
HSP90AB1
CCNI
UBE2D2
PRDX1
CLTC
ZNF48
ZNF641
CCNL1
PRUNE2
PET117
MLLT6
KAT14
DMRTA1
CDC42EP3
TMEM98
TBL1XR1
PABPC5
NMNAT2
LIG4
KSR1
KATNA1
GNAI2
ABHD13
HERPUD2
XRRA1
UCHL5
SPCS2
SOX12
RO60
PROSER1
PDE8B
NUDCD3
NHLRC3
EYA3
CPLX2
GATAD2B
ZNF385A
RMDN2
PLK3
USP22
ATAD2
TMEM242
PHTF1
NANOG
CDK6
CCPG1
C15orf65
GNAL
TOR2A
STX18
SPAST
SOWAHA
RIPK4
RBM15B
PPARGC1A
PLEKHM3
PHIP
MRPL38
HES1
FYN
AKAP9
THAP4
ITGAV
TEKT3
PARK7
KLHL23
KCNH5
C16orf92
ATG4B
IL20
FILIP1L
SPEF2
RUSC2
NAALAD2
IQCH
HEXIM2
FGFBP3
DNAJC19
CHIC2
ATP5MPL
ANKRD50
AMT
AAGAB
DHRS3
TPD52
ZNF860
TRIM9
SPOP
OSBPL10
NLE1
MTMR6
FAM151B
EEF1AKMT4-ECE2
EEF1AKMT4
DEGS1
CYP2U1
CCDC71L
C15orf40
BICD1
ALG3
TSPAN14
SIK2
SETD7
L1TD1
HIVEP2
FAM98B
C8orf37
STK10
MTF2
NDUFS3
KBTBD4
FAM120B
DLL1
BORCS6
KTN1
MSX2
PURA
TAF12
SLC34A3
RNF224
NPIPB6
NAT8L
MAP3K4
FAM107A
ELK4
EBAG9
CYSRT1
CALB1
KDM6B
TIPARP
CDC37L1
SYN2
ZNF419
TGFA
NFKBIA
METTL9
MBOAT2
INKA1
GPC6
GALNT15
FAM221A
CDHR4
BLMH
AFF4
CALM2
TMEM37
PAK1
HNRNPR
HCN1
ARIH1
AMPH
PRMT5
MCM7
AP4M1
SNAPC5
SKA3
PLCH1
NRSN2
MRPL57
LRRC37B
KCNQ3
HTR7
GOLGA6L7
CRYBG1
AFG3L2
FAM222B
AMOTL2
THOC2
SST
MYO1D
MND1
MKRN2OS
MKRN2
FUT8
DLX6
COL23A1
DSTYK
BCL9L
SFRP2
MUC12
MSRB2
GAREM1
ANKRD12
TRIAP1
TMEM202
RTKN2
PLCL2
KCNH1
CTSL
RBPJ
ZC3H6
WNT5A
DNAJC3
ASAP3
AP3B1
ADAMTS3
RAD54L2
TPTEP2-CSNK1E
TMX3
SLC30A5
PLAAT1
PHACTR2
METTL2B
INTS12
HIPK1
HECTD3
GSTCD
FOXN3
CYP2R1
CCDC102B
AMFR
TMEM263
ALK
SSBP2
SYDE2
PKN2
GEMIN4
GAD2
BEST4
SLC35E1
BAZ2B
TMEM267
TJP3
SERPING1
POT1
NKX1-1
GNG3
DCP1B
CNTNAP3
CEP78
BSCL2
TGIF1
STK32C
SLC35G1
RPTOR
LRRC27
FUT1
FGF21
EPHA1
BAZ1A
ANKRD18B
CALM1
STEAP3
RYR1
NAA40
MEF2A
ARL5A
ADAMTS18
YAF2
UAP1L1
TATDN1
SUMF2
SLC2A9
NDUFB9
NCKAP1
EXD2
CDKN2A
MAT2A
ADRA1B
OAZ3
MS4A1
FERMT2
CNTN4
CARNMT1
HNRNPD
PAWR
TTLL7
TRMT6
TEX10
TCF12
RIMBP2
PTPN4
MCM8
HES6
BHLHE41
SYT14
ACOT7
TTLL9
SLC35A3
RAB11FIP3
FRMPD1
CABIN1
YPEL3
TBX6
RNF166
MAPKBP1
DTD2
CTU2
CD99L2
AIFM3
FRG2C
TSKU
VDAC2
IFRD2
MECOM
CCN2
NR1H3
ACP2
SEMA6A
LYRM1
DCUN1D3
CCDC43
C17orf75
POLD4
VPS18
SMPDL3A
MRPL40
MAP4K5
HIRA
FBXO22
CREBL2
AXIN2
ATL1
ARID2
THRB
SNTG2
SEC11A
NSUN7
MYO1B
DHRS4L2
CCKBR
B3GALT1
AS3MT
LONP2
ABCC11
IKZF3
HECTD2
ZPBP2
SPRYD7
TFPI
HNRNPA2B1
CBX3
VGLL3
STK17A
ACOXL
SULT1A4
SULT1A3
SLX1B
SLX1A
GPHN
DYRK3
CHST15
CACHD1
BOLA2B
BOLA2
TCF4
XKR4
SLC44A2
SEPSECS
RBIS
MPHOSPH8
C8orf88
BARD1
ATG7
ELF2
TTC14
SPAG1
KCTD18
COMMD8
ARHGEF1
NUP153
ZBTB2
TTC23L
RBM47
PSMF1
LOC101928764
CCNL2
LOC107986453
YARS1
TAP1
SSH2
S100PBP
PSMB9
PRLHR
PIK3C2B
PCID2
NCR3LG1
KATNIP
GTF3C1
EFCAB5
CUL4A
ATAD1
RBMS1
UBN2
URB2
TRAPPC11
TAF5L
SUPV3L1
SUCO
RWDD4
FKBP5
EIF3A
ARMC12
UQCRC1
TM2D1
ZNF846
ZNF280C
TTC37
SRSF5
RWDD2A
RNF144B
PGM3
NOL11
HERC6
GALNT3
ARSK
SDE2
RANBP2
GCLM
FZD1
ATR
OR2T1
LDHA
USP3
TIMP4
SNRPN
RCOR2
RB1
FEZ2
ASAH1
USP30
IL17RA
TMEM60
STXBP5L
PRSS16
PIGH
PHTF2
MKS1
FGD4
MIXL1
SLC35G4
NEIL2
GOLGA8A
FSIP2
FAM83B
DENND4B
CORO2A
UBE2Z
SOX14
SNX19
SIDT2
HBS1L
FGF9
SLC25A51
PATZ1
ELAVL2
CCDC8
CAMK1D
APCDD1
ZSCAN22
RBP1
PCMTD1
MDP1
CHMP4A
RSPO2
SUGCT
PDCD6IP
MPLKIP
FAM43A