| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| Cluster Table | KAIKOcDNA | 10.18908/lsdba.nbdc00951-002 |
List of number of identical cDNA sequences that make up cluster. |
kaiko_cdna_cluster.zip
(453 KB) |
http://togodb.biosciencedbc.jp/togodb/view/kaiko_cdna_cluster#en |
EST Table data |
The clones those sequences have more than 95% identity each other in a region over 100bp were considered to be the same cluster. Number of clones which belong to each cluster was classified in every cDNA library. |
59,729 entries |
Data detail
open_in_full
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| EST Table | KAIKOcDNA | 10.18908/lsdba.nbdc00951-001 |
List of silkworm ESTs (cDNAs) consisting of publicly available data in addition to sequences registered to public database as of September 2011. |
kaiko_cdna_main.zip
(157 MB) |
http://togodb.biosciencedbc.jp/togodb/view/kaiko_cdna_main#en |
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Each EST was annotated by homology search (BLAST) against six protein databases. ESTs were grouped based on all-against-all BLASTN. For each cluster (group), a representative sequence was chosen, which contains the most upstream region between contigs in each cluster. Each representative sequence was annotated by InterProScan. |
532,655 entries |
Data detail
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| InterProScan Result | KAIKOcDNA | 10.18908/lsdba.nbdc00951-004 |
List of the result of InterProScan target the representative EST. |
kaiko_cdna_interpro.zip
(3.1 MB) |
http://togodb.biosciencedbc.jp/togodb/view/kaiko_cdna_interpro#en |
ORF Table data |
ORFs of the representative ESTs in the clusters were annotated by InterProScan. |
112,731 entries |
Data detail
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| ORF Table | KAIKOcDNA | 10.18908/lsdba.nbdc00951-003 |
List of open reading frames of the representative ESTs. |
kaiko_cdna_orf.zip
(11 MB) |
http://togodb.biosciencedbc.jp/togodb/view/kaiko_cdna_orf#en |
EST Table data |
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200,077 entries |
Data detail
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| DGroup | KEGG MEDICUS | 10.18908/lsdba.nbdc01185-004.V006 |
KEGG DGROUP is a database for structurally and functionally related groups of drugs, especially from the viewpoint of drug interaction networks. |
kegg_medicus_dgroup_en.csv.zip
(612 KB) |
http://togodb.biosciencedbc.jp/togodb/view/kegg_medicus_dgroup_en |
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2,435 entries |
Data detail
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| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata