[Credits]

Life Science Database Archive
KAIKOcDNA

Database Description

General information of database

info Database name KAIKOcDNA
info Alternative name -
info DOI 
info Creator 
Creator Name:
Yoshitaka Suetsugu
Creator Affiliation:
National Institute of Agrobiological Sciences
info Contact address 

1-2 Oowashi Tsukuba, Ibaraki 305-8634, Japan
National Institute of Agrobiological Sciences
Akiya Jouraku
E-mail : kaiko-cdna ad

info Database classification Nucleotide Sequence Databases
info Organism 
Taxonomy Name:
Bombyx mori
Taxonomy ID:
info Database description 

KAIKOcDNA is a database of cDNA (EST) information accumulated by the Silkworm Genome Research Program (SGP).

info Features and manner of utilization of database 

KAIKOcDNA database provides the sets of silkworm partial cDNA sequences with a simple annotation, which submitted to public database such as DDBJ. It allows users to search cDNAs by various methods, e.g. accession number, clone name, BLAST search score, GO (Gene Ontology) term and keywords. Clustering information and annotation of the EST can be referenced from the search results. The characteristic information of the cDNA libraries those are species of silkworm, organ / tissue, and developmental stage, etc.,  is described in "cDNA libraries".

info License CC BY-SA Detail
info Background and funding 
Name:
Grants-in-Aid for Scientific Research <KAKENHI> (No.506015, 1999; No.128102, 2000)
Name:
Management Expenses Grants
Name:
Ministry of Agriculture, Forestry and Fisheries of Japan (MAFF) commissioned research project "Integrated research project for plant, insect and animal using genome technology (basic insect genome research for creating and enhancing market demand)"
info Reference(s) 
Article title:
Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori
Author name(s):
Suetsugu Y, Futahashi R, Kanamori H, Kadono-Okuda K, Sasanuma S, Narukawa J,Ajimura M, Jouraku A, Namiki N, Shimomura M, Sezutsu H, Osanai-Futahashi M,　Suzuki MG, Daimon T, Shinoda T, Taniai K, Asaoka K, Niwa R, Kawaoka S, Katsuma S,Tamura T, Noda H, Kasahara M, Sugano S, Suzuki Y, Fujiwara H, Kataoka H, Arunkumar KP, Tomar A, Nagaraju J, Goldsmith MR, Feng Q, Xia Q, Yamamoto K, Shimada T, Mita K.
Journal:
G3 (Bethesda) / 2013, Sep / vol.9
External Links:
 

Original website information

info Database maintenance site 

info URL of the original website 
info Operation start date 2004/4/12
info Last update date 2011/11/11
info URL of the portal site 
info Whole data download -
info Referenced database 

KAIKObase (http://sgp.dna.affrc.go.jp/KAIKObase/)
InterPro (http://www.ebi.ac.uk/interpro/)
SPRINT (http://www.bioinf.man.ac.uk/dbbrowser/sprint/)
Pfam (http://pfam.xfam.org/)
PIR (http://pir.georgetown.edu/pirwww/index.shtml)
ProDom (http://prodom.prabi.fr/prodom/current/html/home.php)
SMART (http://smart.embl-heidelberg.de/)
SUPERFAMILY (http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi)
CATH/Gene3D (http://www.cathdb.info/)
PROSITE (http://prosite.expasy.org/)
HAMAP (http://hamap.expasy.org/)
PANTHER (http://www.pantherdb.org/)
NCBI (http://www.ncbi.nlm.nih.gov/)
WormBase (http://www.wormbase.org/)
VectorBase (https://www.vectorbase.org/)

info Entry list Available
info Query search Available
info Web services Not available
info URL of Web services -
info Need for user registration Not available