ChIP-Atlas: Target genes

Potential target genes for HNF4A

Query protein: HNF4A
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX748420 | HCT 116
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
HNF4A's Target genes

◢ HNF4A: Average

◢ SRX026267: Caco-2

◢ SRX026268: Caco-2

◢ SRX6076676: ESO-26

◢ SRX360570: GP5d

◢ SRX360584: GP5d

◣ SRX748420: HCT 116

◢ SRX748425: HCT 116

◢ SRX748426: HCT 116

◢ SRX748433: HCT 116

◢ SRX748434: HCT 116

◢ SRX018625: Hep G2

◢ SRX018626: Hep G2

◢ SRX100505: Hep G2

◢ SRX150698: Hep G2

◢ SRX702025: hESC derived mesendodermal cells

◢ SRX702026: hESC derived mesendodermal cells

◢ SRX702027: hESC derived mesendodermal cells

◢ SRX702028: hESC HUES64

◢ ERX159250: LoVo

◢ ERX159251: LoVo

◢ SRX361882: LoVo

◢ SRX361888: LoVo

◢ HNF4A: STRING

MTRNR2L2
MSH3
DHFR
MTRNR2L8
KDM6B
ISG15
HES4
KIF5C
ACSL5
NDUFS1
EEF1B2
MTRNR2L1
RGPD2
RGPD1
MAMDC2
SCRT2
CRYBG2
PHF12
NSMCE1
MTRNR2L9
NEK2
PRR3
GNL1
MIA2
NOP9
LTB4R
LTB4R2
DHRS1
CIDEB
SKIV2L
NELFE
CCL20
SLC9A3R1
CCDC90B
UQCRHL
GNAZ
ATXN7L1
SH3D21
TRIB3
LOC100509620
MYC
PIH1D1
ALDH16A1
WDR74
STX5
CCDC71
SEPTIN4
SFRP5
INAVA
ART1
URGCP-MRPS24
URGCP
ARHGEF39
SIT1
CCDC107
MIDEAS
RPS3A
POLR2E
GPX4
DUX4
CDC14B
ARL14
CXCL17
SCARB1
RHOC
WDR36
LOC102724770
DGCR6
CSTF1
AURKA
KNL1
LOC390877
GTF2F1
POLR1E
KIZ
CENPVL2
CENPVL1
PCGF1
LBX2
CPLX2
LMTK3
HMOX1
FAM169A
SGIP1
DNAJC25-GNG10
DNAJC25
ABLIM1
DKK4
SEC24D
SLC3A2
CCDC200
C19orf12
SF3A3
ERBB3
RAPGEF1
SPON1
PADI3
SELENOP
PTP4A1
TRIM48
SMARCD2
MORC1
NCOA4
PHC2
MRPS10
NEK6
KRT31
TNFRSF10B
LASP1
YARS1
S100PBP
IRF2BP2
PPP2CB
NQO2
PPIP5K2
NFE2L3
RPP25L
PLAUR
B3GLCT
BCL9L
EAPP
MRPS28
CERS2
USP2
LENG8
ZBED9
SPTBN4
C11orf24
TMEM169
PECR
RPL34
FAM3C
BPHL
GAB1
EXOC1
SP2
HRH2
IST1
B3GNT3
ZSWIM3
ACOT8
AGPAT2
RBBP5
NR1I3
MTRNR2L10
TESK2
MMACHC
ROCK2
ATRN
MVP
SEC13
COPS4
CEP128
PRKCD
ARPIN-AP3S2
ARPIN
UBE2R2
SGCB
TPT1
SPHK2
DBP
CD2BP2
MEAK7
IRAG1
ACY1
ABHD14B
ABHD14A-ACY1
ABHD14A
CFLAR
KRTAP5-7
MMP20
RFX2
RARA
MUC3A
SAXO1
RRAGA
MRPL24
HDGF
RBKS
BABAM2
TTC31
CCDC142
TP53I3
SF3B6
FAM228B
RAB17
NCS1
C1QTNF1
CDHR2
RNF44
TJP3
PRDM10
ADI1
NFIL3
PTPRF
CLASP1
PRAG1
KDM3A
TIGD3
PLOD1
KIAA2013
CHST11
MAN2C1
NUP107
GUCA1B
ERICH3
TNFRSF1A
GOLGA4
SERINC5
CLCF1
LOC102723996
ICOSLG
TSPAN1
PIK3R3
P3R3URF-PIK3R3
P3R3URF
TRIM2
GJB1
ARNT
INTS4
SEC23A
SIAH2
CSNK1A1
SIRT7
SLC20A1
SH3D19
CDK5RAP1
MAFG
AFF1
GUCA2A
GNB1
YJU2
FUT5
ZC3H12D
ETS2
RBP2
METTL7B
SPTBN1
MAP1LC3C
SNRPD3
GUCD1
PDXP
MMADHC
TMEM183A
RFFL
ABCA10
S100A16
S100A14
MGAT1
MICAL2
SNN
AMN1
FZR1
DOHH
RIPK4
OCIAD2
ABR
PRKCI
ATF4
TM4SF1
CA7
CAMK2G
CD86
ALG10B
VPS54
JUND
IQCN
SLC27A5
BCAM
TEX45
PEX11G
TDP2
ACOT13
ABCC3
PGLYRP2
EIF1AD
CST6
BANF1
TMEM120A
CCNI
PAX2
TINAGL1
DUSP1
PRKCSH
CCDC151
TNPO3
HMGN4
MYRF
ALDH3A2
SLC25A17
ABTB2
RNF43
MBD3
PSMA5
DNAJC22
ACAA2
DSG2
C16orf74
LSG1
EIF4A2
GDF15
PPP1R12B
UBE2T
IGFBP4
BAAT
RUNDC3A
CIBAR2
TM9SF1
IPO4
ZNF827
U2SURP
PPP1R35
YAP1
SOWAHA
RABGGTB
LSM5
AVL9
SYT12
LDAH
BORCS7
AKR1A1
PEMT
RPS7
PRKAG2
POLDIP3
APBA2
TIMM9
KIAA0586
SLC7A5
GDPD1
EPS8
CCND2
MRPL2
KLC4
CUL7
RPL7
RDH10
SPDYE14
SPDYE10P
PPP1R11
POLR1H
ZFP36L2
CELA2A
HOXA4
HOXA3
EDN2
HOXA5
CA13
CYP17A1
PTS
RNF121
LOC100133315
ZNF408
ARHGAP1
ZNF653
B4GALT4
DPAGT1
C2CD2L
TNFAIP8L2-SCNM1
TNFAIP8L2
LAPTM4A
SCNM1
LYSMD1
SLC1A3
STAT6
NUDCD1
NPTXR
VGLL4
P3H4
FKBP10
GLRX2
CDC73
MRPL11
C1orf174
SHTN1
TKFC
DDB1
KHK
RCOR1
RAB30
USP16
RWDD2B
LY75-CD302
LY75
SKIDA1
MLLT10
PTPRH
PAOX
ECHS1
PKP4
CCDC148
EPS8L2
DEAF1
VIL1
HNF1A
HAAO
CNNM3
PGAP3
ERBB2
TREX1
SHISA5
SLCO4A1
VTN
SEBOX
SARM1
ORC2
SCAF11
PSMD1
ZFP36
PKDCC
LRRC1
SLC7A7
SLCO2B1
PINK1
TACR2
GET1
NUMB
PLEKHG2
NPB
PANK1
TATDN3
NSL1
PCNX3
MAP3K11
ZMIZ1
PPP5D1
CALM3
PCYT2
GPR35
DOCK6
ZBTB48
MACC1
KIF21A
GPR171
CDK3
SMPDL3A
DIDO1
PABPN1
ZSWIM1
SPATA25
NEURL2
CTSA
HADHB
HADHA
CLIP2
ACOX2
ARHGAP27
LHPP
ATE1
PHETA1
PRR15L
USP18
PHLDB3
ZNF567
GGT1
NRL
DCAF11
SMAD3
CREB3L3
AHCY
MAD2L2
FBXO6
CCN2
FGFR3
MGST2
ACY3
GCLC
SULT2B1
EPS8L3
NMD3
AP1M1
SLC19A3
AGMAT
PAF1
MED29
SRCIN1
TULP2
NUCB1
CARHSP1
GPA33
CDH17
CSNK1D
TP53I13
ABHD15
IDH1
TSC22D1
IL6ST
F11R
TNS3
RAB37
EDEM1
VHLL
TMEM79
SMG5
GLMP
CNDP1
WSB2
APOC3
VAMP8
VAMP5
LIMK2
SDC1
HNMT
SLC35D2
GPRC5C
LGALS4
PRUNE1
MINDY1
PLEKHG6
IDNK
CAB39
DENND2B
BRMS1
B4GAT1
NOMO3
ABCC6
APOA1
IGSF23
IL20RB
ITPK1
DHRS3
RHEX
FN3K
DOCK5
CDR2
SRSF11
LRRC40
PDF
AJUBA
F10
TRIM15
TRIM10
COLCA2
WEE1
C2orf88
AHSG
TPCN2
ZNF219
TMEM253
PUS10
PEX13
MYD88
ACAA1
INPP1
ASS1
SYBU
GSE1
IGF2BP3
SFXN3
PDZD7
GALE
NUDC
NR0B2
ID1
FBXO31
PPIL2
GDF7
AQP11
FCHO2
DENND5B
CERK
APOB
FTH1
CSF1R
SUCLA2
NR1D1
SDCBP2
CCL16
GLRX
SPATA2
PLXNB2
TMEM177
GTF2I
STK24
TRAF7
RAB26
TTYH3
XYLB
RGS3
POLD4
HDHD3
NQO1
COL21A1
COMT
TNRC18
LOC100129484
PET117
KAT14
CA9
PDLIM2
LAMB1
CBSL
CBS
CPNE5
WFDC9
WFDC10A
LSM1
SPAAR
HRCT1
ANKS4B
SLC45A4
BCAR1
POR
AFP
GDI2
KRTAP5-6
TDRD7
C19orf33
LARP1
FAM110B
PAAF1
DAND5
COA4
GIMAP5
TCIRG1
NDUFS8
LURAP1L
GAL3ST2
TK1
AFMID
PER2
NDUFA6
MYO18A
FNDC11
TCP10L
SMARCD1
ASIC1
KIF1C
INCA1
BLOC1S5
CTDSP1
PTK6
RSPH10B2
RSPH10B
MMP24OS
MMP24-AS1-EDEM2
FAM83C
EIF6
LIPE
ATP7B
ALG11
RAB5IF
PTDSS2
KLHDC2
ANO9
AGXT
UBR4
TMBIM1
APOA4
GPR142
ALOX12B
PERP
CORO1C
MLXIPL
VPS25
BRCA1
BAG4
IQANK1
FAM83H
CBY3
PTK2B
EHD1
MIDN
WNK4
REG4
SH3GL1
SP1
ADAP1
SNRPA
C19orf54
HGD
FYB2
AGT
IQGAP2
IL32
CFB
NID1
SMIM19
SLC20A2
CYB5R3
ATP5MGL
NOMO1
ZNF232
USP6
PLEKHB2
FAM168B
GNAL
CHMP1B
C1orf210
WAS
PPP1R27
MCRIP1
FAM107B
PTPRN2
CXADR
SRMS
TBC1D22A
SECTM1
GSDMD
KDELR2
IFNGR1
FUOM
GAL3ST1
SOS1
HIC2
NIBAN2
NEK4
ITIH1
OXCT2
PTK7
RAPGEF4
CARM1
ZNF764
TAS2R19
SPG7
LIME1
GNG4
MBNL2
RAB43
MSH5
DDAH2
CLIC1
LRP1
HSPE1-MOB4
HSPE1
HSPD1
GAPDH
TRIM47
CPNE7
PON2
FASTKD1
PALM3
CPPED1
DNAAF2
DOK4
PDE11A
G6PC
SEPTIN9
FITM2
ALKBH7
LYRM7
HINT1
PSPN
ITGB2
MAN1A1
TSPAN8
PABPC4
MOV10L1
SPPL2B
LSM7
RAD50
PEPD
IL1R1
C1GALT1
SERPINF2
APOL6
ZSCAN2
RBFOX2
PROCR
NHSL1
PDPK1
PHACTR4
COL5A3
LPP
PPP4C
GLYCTK
UCKL1
RUVBL1
C9orf64
IRF2BPL
CBARP
ATP5F1D
PPEF2
LTV1
BCL2A1
SDR9C7
ANK2
PRAP1
DENND10
NFATC3
CDKN2AIP
H4C3
H1-6
VWCE
RAMP1
TRIM14
ZFP36L1
WDR81
TLCD2
GIP
PRSS8
LRRC20
F7
COL13A1
SLC2A9
TECTB
OPA3
TNFSF15
ELL
ATP6V0A1
CMC1
MRPL20
CCNL2
SLURP2
EEFSEC
SPOCK2
H6PD
ENDOD1
SF3A2
PLEKHJ1
C11orf86
SMAGP
NEU4
PLA2G4C
DNMT3A
MOGAT3
MBL2
EPHX2
MIA3
LIPK
ADGRG1
FGG
HSD17B11
ZNF184
EGLN1
TADA1
ABCD3
DMAP1
TANK
OPTN
KIFC3
CCDC3
ANXA9
ZFAND2A
GNA11
SH3YL1
ACP1
SH3BGRL2
NOL4L
TRAF4
C3
RNF126
GLI1
INHBE
SLC25A5
MESP2
QPRT
UBA6
PLIN3
SPINT2
PRXL2A
TRIM26
KHNYN
CBLN3
HAGH
FAHD1
UBA5
DSP
ACAD11
AKAP1
MMP15
EFNA2
CDX2
C12orf43
TM4SF5
PAK4
TCAF1
STX16
SCN9A
MRPL33
VEGFA
TMEM270
HJV
MTMR11
NCR3LG1
SMYD5
FMN1
PRMT1
IRF3
BCL2L12
SPTSSA
MTA3
HCAR3
HCAR1
SIN3A
CAPN3
SEC16B
TMEM150B
APOBEC3A_B
APOBEC3A
FKBP7
COMTD1
ZNF541
CRK
MTIF2
DNAJB3
RUNX1
ATXN7
ZNF710
NHLRC4
ZNF362
TMCO1
CEMP1
CCL14
NET1
NNAT
BLCAP
IL4R
SARDH
USH1C
OTOG
KIF5B
FOXA3
SPRED2
FAM50B
OSBP
FBXO46
MST1
HEXB
RAB32
DIP2C-AS1
CEBPG
CSRNP1
SEPSECS
ZNF564
MYADM
SLC38A3
KCTD17
TMPRSS9
TEP1
PLXNC1
PLXNB1
CCDC51
MTMR4
PDGFB
CAPN2
RAB5C
PC
LRP5L
HMGCS1
SLC50A1
EFNA1
DENND1A
RCL1
PRR35
PSMB3
PCGF2
DCBLD1
PNOC
FAM20A
LRRC3
PTTG1IP
ZFAND3
GDA
BAIAP2L2
TUBG1
RETREG3
KLF3
SLC28A1
DUS1L
ABHD12B
GIPC2
TUBG2
RHBG
SBF2
DYNC2I1
NOMO2
CIDEC
ZBTB46
ZNF512B
ARHGEF10L
AMACR
BIRC2
BCAT1
AP1B1
CYP1A1
SERINC2
STARD7
ZFHX3
TNIP2
IVD
SLC39A14
SERTAD2
POLR2C
CNNM2
ZNRF1
WDR59
SPATS2L
HOXC10
PIF1
MSRB1
RBP5
CLSTN3
CCR6
PMVK
SHF
CSRNP3
RNF223
EPN1
C5AR1