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Data name Database name DOI Description of data contents Data acquisition method Data analysis method Data detail
Nuclear-like Seq in mt Genome RMG 10.18908/lsdba.nbdc00193-005

List of sequence fragments in rice mitochondrial genome that showed similarity to nuclear retrotransposon and transposon sequences.

"Entire Sequence" data in this database

Homology searches using BLASTX

Data detail open_in_full
Plastid-like Seq in mt Genome RMG 10.18908/lsdba.nbdc00193-004

List of characteristic features of DNA fragments that were migrated from the plastid genome to the mitochondrial genome. Information on sizes, positions, gene names, homologies and differences for individual fragments is available.

"Entire Sequence" data in this database

Data detail open_in_full
tRNA RMG 10.18908/lsdba.nbdc00193-006

Data contents are as follows:


  • Amino acid sequences of 23 tRNA from 17 species identified in the rice mitochondrial genome.

  • List of genes in rice, Arabidopsis and sugar beet mitochondrial genomes and their existence in mitochondrial genomes of other plants.

"Entire Sequence" data in this database

Data detail open_in_full
8987Array-Chromosome RMOS 10.18908/lsdba.nbdc00194-008

Position information of the clone of Rice8987 Array (f_array) on chromosomes

Data detail open_in_full
Array patterns and clones RMOS 10.18908/lsdba.nbdc00194-002

Static files of array patterns and cDNA clones.

- Rice1265
Independent rice cDNA clones of 1265 ESTs were collected randomly. All of clones were generated by large scale cDNA analysis in RGP (rice genome research program).
 
- Rice8987 f_array
Our microarray with rice cDNA comprises a pair of glass slides. The microarray patterns are shown in the figure. On the pair of rice microarrays, there are independent 8979 cDNA clones that were selected from about 40,000 cDNA clones isolated in the first research stage of the rice genome research project. Field 12 is for pig ESTs as positive controls that do not.
 
- Rice8987 g_array
For all microarray experiments on and after July 1, 2002, second version of our rice microarray (called “g_array”) is used. The “g_array” carries the same 8987 cDNAs (with the full inserts) that the Rice8987 Array carries. However the location of each cDNA clone on “g_array” is different from that on the Rice8987 Array.

We fabricated a full insert cDNA microarray and a 3’UTR cDNA microarray. cDNA were applied as duplicate spots on the same glass slide. Blanks in the table (no name) mean that the clones with blank are not registered in DDBJ yet.

Data detail open_in_full
Data name Database name DOI Description of data contents Data acquisition method Data analysis method Data detail