Search for Data Metadata

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Data name ⇅	Database name ⇅	DOI ⇅	Description of data contents ⇅	Data acquisition method ⇅	Data analysis method ⇅	Data detail
SRA	MicrobeDB.jp	10.18908/lsdba.nbdc01181-006.V002	Metadata and taxonomic/functional compositions of 16S rRNA gene-based amplicon sequencing and metagenomic shotgun sequencing samples. Metadata were annotated by several ontologies (i.e., MEO, MSV, and NCBI Taxonomy). Data file (compressed in tar.gzip) consists of some directories (see the following table).	Metadata and DNA sequence data of each 16S rRNA gene-based amplicon sequencing and metagenomic shotgun sequencing sample were obtained from INSDC DRA/ERA/SRA.	After quality filtering of reads, DNA sequence data of all 16S rRNA gene-based amplicon sequencing and metagenomic shotgun sequencing samples were phylogenetically analyzed by VITCOMIC2. Functional composition of metagenomic shotgun sequencing samples were analyzed by the combination of MetaGeneMark, GHOSTX, and Refsequences database.	Data detail open_in_full
AntiBody	Mouse Basement Membrane Bodymap	10.18908/lsdba.nbdc00574-002	It is the list of antibodies to stain the target proteins.			Data detail open_in_full
Bodymap	Mouse Basement Membrane Bodymap	10.18908/lsdba.nbdc00574-003	It is the collection of high resolution virtual slides created from gigapixel digital images of mouse embryo. Simple search has two interfaces, "protein-based" and "tissue-based". Protein-based search: http://togodb.biosciencedbc.jp/togodb/view/matrixome_bodymap_protein_based Tissue-based search: http://togodb.biosciencedbc.jp/togodb/view/matrixome_bodymap_tissue_based To view or download original images of virtual slides, see the following page. https://togodb.biosciencedbc.jp/togodb/view/matrixome_bodymap_imagelist#en	Whole mouse sagittal and head frontal sections were immunohistochemically stained with the antibody against each target protein, and their adjacent sections were stained with hematoxylin/eosin. And they are shown zoomed for each tissue. Please see for detail: http://dbarchive.biosciencedbc.jp/archive/matrixome/bm/AboutBodymap/Production/production.html		Data detail open_in_full
Protein List	Mouse Basement Membrane Bodymap	10.18908/lsdba.nbdc00574-001	It is the list of basement membrane proteins shown in images.			Data detail open_in_full
def_phenotype	Mutant Panel	10.18908/lsdba.nbdc00229-002.V001	Definition of phenotype.			Data detail open_in_full
Data name	Database name	DOI	Description of data contents	Data acquisition method	Data analysis method	Data detail