Search for Data Metadata
| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Data detail |
|---|---|---|---|---|---|---|
| BLOCKS List | DB-SPIRE | 10.18908/lsdba.nbdc00411-004 |
The list shows BLOCKS entries and PDB entry/chain matching status. |
BLOCKS |
word search, motif search |
Data detail
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| PROSITE - PDB SEQRES matching | DB-SPIRE | 10.18908/lsdba.nbdc00411-003 |
Sequence numbers of PDB entries/chains whose SEQRES matches a PROSITE entry |
PROSITE, PDB(Protein Data Bank) |
word search, motif search |
Data detail
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| PROSITE Information | DB-SPIRE | 10.18908/lsdba.nbdc00411-002 |
It shows PROSITE entries and PDB entry/chain matching status. |
PROSITE |
word search, motif search |
Data detail
open_in_full
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| PROSITE List | DB-SPIRE | 10.18908/lsdba.nbdc00411-001 |
The list shows PROSITE entries and PDB entry/chain matching status. |
PROSITE |
word search, motif search |
Data detail
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| Allele Frequency Data | dbQSNP | 10.18908/lsdba.nbdc00042-001 |
SNP allele frequencies in Japanese and European populations, determined by quantitative fluorescent PCR-SSCP analysis of pooled DNA. |
Most of SNPs described here were initially collected by Sanger sequencing of transcription start sites (TSSs) of 8 randomly picked Japanese. Short fragments harboring the SNPs were further analyzed for their allele frequencies in several populations using quantitative fluorescent PCR-SSCP analysis of pooled DNA samples (Kukita et al. 2002; Baba et al. 2003: Tahira et al. 2005). A part of the results of association study of breast cancer patients (Miyagi et al. unpublished) and lupus erythematosus patients were also included (Miyagawa et al. 2008; Sakaguchi et al. unpublished). |
Data analysis of fluorescent SSCP analysis was performed using QUISCA software that was integrated in dbQSNP system (Higasa et al. 2002; Sasaki et al. 2001; Tahira et al. 2005). SNPs in dbQSNP were submitted to dbSNP of NCBI under the handle name of KYUGEN, and refSNP ID #s were identified or given. |
Data detail
open_in_full
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| Data name | Database name | DOI | Description of data contents | Data acquisition method | Data analysis method | Data detail |