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Data name Database name DOI Description of data contents Data acquisition method Data analysis method Data detail
SNP List (Phase III) D-HaploDB 10.18908/lsdba.nbdc00036-002

A list of SNPs in D3 (Phase III). The data is essentially the same as those described in Kukita et al. (2010) paper, but contains additional samples (CHM010 and CHM035) because their data were judged to be acceptable with regard to genotypes, though they were excluded at QC steps in the previous report. LD bins were then determined.

Affymetrix SNP 6.0

A hundred complete hydatidiform moles (CHMs) were genotyped using Affymetrix SNP Array 6.0, and mapped on the human reference genome sequence, NCBI Build 36. Low log2R calls, calls judged to be in deleted regions (determined by CNV analysis), and heterozygous calls were forced to no calls, as described in the Kukita paper. After QCs by sample call rate and SNP call rate, the final data for 87 CHMs (876K SNPs) was obtained. See "LD bin List" for the calculation of LD bins.

Data detail open_in_full
BLOCKS - PDB ATOM matching DB-SPIRE 10.18908/lsdba.nbdc00411-008

Sequence numbers of PDB entries/chains whose ATOM matches a BLOCKS entry

BLOCKS, PDB

word search, motif search

Data detail open_in_full
BLOCKS - PDB matching DB-SPIRE 10.18908/lsdba.nbdc00411-006

PDB entries/chains which matches a BLOCKS entry

BLOCKS, PDB

word search, motif search

Data detail open_in_full
BLOCKS - PDB SEQRES matching DB-SPIRE 10.18908/lsdba.nbdc00411-007

Sequence numbers of PDB entries/chains whose SEQRES matches a BLOCKS entry

BLOCKS, PDB

word search, motif search

Data detail open_in_full
BLOCKS Information DB-SPIRE 10.18908/lsdba.nbdc00411-005

It shows BLOCKS entries and PDB entry/chain matching status.

BLOCKS

word search, motif search

Data detail open_in_full
Data name Database name DOI Description of data contents Data acquisition method Data analysis method Data detail