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Data name ⇅ Database name ⇅ DOI ⇅ Description of data contents ⇅ Data acquisition method ⇅ Data analysis method ⇅ Data detail
Data of structural flexibility ConfC 10.18908/lsdba.nbdc00400-004

The regions of structural flexibility are selected with the Z score of temperature factor (B-factor) values by Cα atom of each residue in PDB.

PDB (Protein Data Bank)

The regions of structural flexibility are selected with the Z score of temperature factor (B-factor) values by Cα atom of each residue in PDB.

Data detail open_in_full
Protein structure image ConfC 10.18908/lsdba.nbdc00400-006

Structure images of the protein which has structural flexibility.
Each image is linked from "Data of structural flexibility" table.

Data detail open_in_full
Supplement data for conformation changes by some binding ConfC 10.18908/lsdba.nbdc00400-002

The distance values of φ and ψ between the superimposed protein structures of each residues are calculated, and the Z score of distance is computed.The information about a regions of structural change sekected with the Z score is stored.

PDB (Protein Data Bank)

The distance values of φ and ψ between the superimposed protein structures of each residues are calculated, and the Z score of distance is computed. Finally, the regions of structural change are selected with the Z score

Data detail open_in_full
InCeP CREATE portal 10.18908/lsdba.nbdc00403-002

mKIAA intracellular signaling pathway.

Immunoprecipitation: Extracts derived from adult mouse tissues and cell lines were immunoprecipitated using anti-mKIAA antibodies.
Mass spectrometory: Precipitated proteins were separated by SDS-PAGE and protein bands cut out from the gel were analyzed by mass spectrometry.

Mass spectrometry: Results obtained by LC-MS were analyzed by Mascot and precipitated proteins were predicted.
KeyMolnet analysys: Images of mKIAA intracellular signaling pathway were constructed by merging protein information obtained by mass spectrometry and known information using KeyMolnet software.

Data detail open_in_full
InCeP images CREATE portal 10.18908/lsdba.nbdc00403-003

Image files of mKIAA intracellular signaling pathway.

From "Keymol net data"

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Data detail open_in_full
Data name Database name DOI Description of data contents Data acquisition method Data analysis method Data detail