Search for Data Metadata
| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Data detail |
|---|---|---|---|---|---|---|
| Clone | ClEST | 10.18908/lsdba.nbdc01137-001 |
Infomarion of clones of each Cimex lectularius EST library |
One pass sequencing from 5' termini using the Sanger sequencing method with ABI3130xl |
Basecalling by the phred program |
Data detail
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| Cluster | ClEST | 10.18908/lsdba.nbdc01137-002 |
Information of clustered sequences including Blastx search results and GO annotations |
"Clone" dataset |
Clustering using the phred/phrap program, Blastx homology search against a non-redundant protein database from the NCBI web site, and describing presumed function and GO annotation using the Blast2GO software. |
Data detail
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| Conformation analysis | ConfC | 10.18908/lsdba.nbdc00400-005 |
Results of conformation analysis for PDB files (raw data)
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Data detail
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| Data of conformation changes by some binding | ConfC | 10.18908/lsdba.nbdc00400-001 |
A protein structure pair which ID% (sequence identity) is more than 99%, and Dmax (maximum distance between Cα atoms of superimposed protein structures) is more than 20 Å, is stored. |
PDB (Protein Data Bank) |
The distance values of φ and ψ between the superimposed protein structures of each residues are calculated, and the Z score of distance is computed. |
Data detail
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| Data of evolutionary structure change | ConfC | 10.18908/lsdba.nbdc00400-003 |
The information about a regions of structural change by mutation, insersion and/or deletion is stored. |
PDB (Protein Data Bank) |
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Data detail
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| Data name | Database name | DOI | Description of data contents | Data acquisition method | Data analysis method | Data detail |