Search for Data Metadata
| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Data detail |
|---|---|---|---|---|---|---|
| Antigen list | ChIP-Atlas | 10.18908/lsdba.nbdc01558-004.V020 |
A list of all antigen names of data provided on ChIP-Atlas. See details here: https://github.com/inutano/chip-atlas/wiki#downloads_doc |
We have generated the list by curating metadata manually. |
See details of data processing here: https://github.com/inutano/chip-atlas/wiki |
Data detail
open_in_full
|
| Cell type list | ChIP-Atlas | 10.18908/lsdba.nbdc01558-005.V020 |
A list of all cell type names of data provided on ChIP-Atlas. See details here: https://github.com/inutano/chip-atlas/wiki#downloads_doc |
We have generated the list by curating metadata manually. |
See details of data processing here: https://github.com/inutano/chip-atlas/wiki |
Data detail
open_in_full
|
| Data directory | ChIP-Atlas | 10.18908/lsdba.nbdc01558-006.V020 |
All ChIP-Seq data analyzed on ChIP-Atlas. BigWig, Bed, BigBed format files are provided for each individual Experiment. Bed files are provided for data assembled by antigens and cell types. Analysis data from target genes analysis and colocalization analysis are provided in tab separated values (tsv). See details here: https://github.com/inutano/chip-atlas/wiki#peak_browser_doc
|
We have processed data downloaded from SRA by using a standard ChIP-Seq data analysis pipeline. See details here: https://github.com/inutano/chip-atlas/wiki |
See details of data processing here: https://github.com/inutano/chip-atlas/wiki |
Data detail
open_in_full
|
| Experiment list | ChIP-Atlas | 10.18908/lsdba.nbdc01558-001.V020 |
A list of metadata of the reanalysed ChIP-Seq data archived in Sequence Read Archive (SRA), grouped by SRA Experiment ID, providing the information of reference genome data, antigen, or cell type. See details here: https://github.com/inutano/chip-atlas/wiki#downloads_doc |
We have processed data downloaded from SRA by using a standard ChIP-Seq data analysis pipeline, then we curated metadata of archived data manually. |
See details of data processing here: https://github.com/inutano/chip-atlas/wiki |
Data detail
open_in_full
|
| File list | ChIP-Atlas | 10.18908/lsdba.nbdc01558-002.V020 |
A list of merged bed file and its metadata, including reference genome data, antigen, cell type, and identifier of merged experiments. See details here: https://github.com/inutano/chip-atlas/wiki#downloads_doc |
We have generated a list of this bed file automatically by processing data downloaded from Sequence Read Archive. |
See details of data processing here: https://github.com/inutano/chip-atlas/wiki |
Data detail
open_in_full
|
| Data name | Database name | DOI | Description of data contents | Data acquisition method | Data analysis method | Data detail |