| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| Complex Model Structure | SAHG | 10.18908/lsdba.nbdc01193-007 |
Predicted protein compex structure (PDB format). |
complex_model_structure.zip
(1.1 GB) |
- |
If a target sequence was related to a given subunit of a template complex in PQS database with >=80% sequence identity by the BLAST search and all the other subunits were related to any target sequences, the complex model was constructed by MODELLER. |
- |
8,667 entries |
Data detail
open_in_full
|
| Complex Modeling | SAHG | 10.18908/lsdba.nbdc01193-003 |
Protein-protein copmlex modeling predition |
sahg_complex.zip
(147 KB) |
http://togodb.biosciencedbc.jp/togodb/view/sahg_complex#en |
If a target sequence was related to a given subunit of a template complex in PQS database with >=80% sequence identity by the BLAST search and all the other subunits were related to any target sequences, the complex model was constructed by MODELLER. |
- |
8,667 entries |
Data detail
open_in_full
|
| Domain Model Structure | SAHG | 10.18908/lsdba.nbdc01193-006 |
Predicted protein structure (PDB format). |
domain_model_structure.zip
(1.6 GB) |
- |
3D structures, protein-ligand interaction, and protein-protein interaction were predicted based on the amino acid sequece by our prediction pipeline (Motono et al., Nucleic Acids Research, 2011, 39, D487-D493). |
- |
46,269 entries |
Data detail
open_in_full
|
| Domain Modeling | SAHG | 10.18908/lsdba.nbdc01193-002 |
Predicted structure of the domain, information of the templates, predicted interactions. |
sahg_domain.zip
(3.4 MB) |
http://togodb.biosciencedbc.jp/togodb/view/sahg_domain#en |
3D structures, protein-ligand interaction, and protein-protein interaction were predicted based on the amino acid sequece by our prediction pipeline (Motono et al., Nucleic Acids Research, 2011, 39, D487-D493). |
- |
42,581 entries |
Data detail
open_in_full
|
| Model Structure Thumbnail | SAHG | 10.18908/lsdba.nbdc01193-005 |
Still/animated images of the predicted protein domain sturctures. |
model_structure_thumbnail.zip
(404 MB) |
- |
The predicted domain structres in PDB format were visualized by a software. When models of both apo and holo forms are available (green block on the bar), their structural changes upon ligand-binding are visualized by the morphing technique (the MORPH2). |
- |
42,581 entries |
Data detail
open_in_full
|
| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata