| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| Table of 3D organ model IDs and organ names (PART-OF Tree) | BodyParts3D | 10.18908/lsdba.nbdc00837-002 |
List of downloadable 3D organ models in a tab-delimited text file format, describing the correspondence between 3D organ model IDs and organ names available in PART-OF Tree. |
partof_parts_list_e.txt (PART-OF Tree)
(58 KB) |
http://togodb.biosciencedbc.jp/togodb/view/bodyparts3d_partof_parts_list_e | 1,368 entries |
Data detail
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| 5'-end sequences of budding yeast full-length cDNA clones | Budding yeast cDNA sequencing project | 10.18908/lsdba.nbdc00838-002 |
cDNA sequence data of budding yeast. Sequence data in the FASTA format, one file for each cDNA, and compressed to a single file in the tar.gz format. 83,706 entries. |
Sequence.tar.gz
(21MB) |
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Sequencing |
83,706 entries |
Data detail
open_in_full
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| 5'-end sequences of budding yeast full-length cDNA clones and quality scores | Budding yeast cDNA sequencing project | 10.18908/lsdba.nbdc00838-001 |
5'-end sequences of full-length cDNA clones generated from the budding yeast full-length cDNA library by the vector-capping method, the sequence quality score generated by the Phred software, and links to SGD, dbEST and UCSC Genome Browser are provided. Links to the SGD are found only in the cDNAs mapped to the genome. Links to dbEST and UCSC Genome Browser are found only in the cDNAs possessing genuine 5'-end. The number of links to SGD is 51,027, the number of links to dbEST and UCSC Genome Browser is 31,847, and the total number of cDNAs is 83,707. The data are given in a CSV format text file. |
yeast_seq_qual.zip
(59.9MB) |
http://togodb.biosciencedbc.jp/togodb/view/budding_yeast_cdna_sequencing_project#en |
- |
Sequencing, Base call by Phred |
83,706 entries |
Data detail
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| cDNA sequence quality data | Budding yeast cDNA sequencing project | 10.18908/lsdba.nbdc00838-003 |
Phred's quality score. PHD format, one file to a single cDNA data, and compressed to a single file in the tar.gz format. 83,706 entries. |
Quality.tar.gz
(45MB) |
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Base call by Phred |
83,706 entries |
Data detail
open_in_full
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| Vector sequences | Budding yeast cDNA sequencing project | 10.18908/lsdba.nbdc00838-004 |
Vector sequences used for sequencing. Multi FASTA format. 7 entries. |
vector_seqeunce.fasta.gz
(1KB) |
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- |
7 entries |
Data detail
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| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata