| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| tos17_insertion | Mutant Panel | 10.18908/lsdba.nbdc00229-005.V001 |
Insertion position of Tos17 relative to the rice genome reference sequence (Nipponbare, IRGSP-1.0) in each mutant line |
tos17_tos17_insertion.csv.zip
(751 KB) |
https://togodb.biosciencedbc.jp/togodb/view/tos17_tos17_insertion#en |
A BLASTN search of Tos17 insertion adjacent sequence (flanking) was performed against IRGSP-1.0 to obtain Tos17 insertion position. |
82790 |
Data detail
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| Basic Information | NBDC Nikkaji RDF | 10.18908/lsdba.nbdc01530-02-001.V011 |
This RDF data contains the basic information of 3.6 million or more chemical substances, such as Nikkaji Number, molecular formula, molecular weight, and English/Japanese name. |
NBDC_NikkajiRDF_main.tar.gz
(1.0 GB) |
- |
This RDF is described by using widely used terms and ontologies, such as rdfs:label, rdf:type, owl:sameAs, dcterms:identifier, and foaf:depiction. |
3,671,776 compounds |
Data detail
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| Canonical SMILES | NBDC Nikkaji RDF | 10.18908/lsdba.nbdc01530-02-003.V011 |
This RDF data contains canonical SMILES of chemical substances registered in Nikkaji by using CHEMINF, SIO and other ontologies. We recommend using this RDF together with the Core RDF. |
NBDC_NikkajiRDF_SMILES.tar.gz
(149 MB) |
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Canonical SMILES were obtained from J-GLOBAL Chemical Substance Database. Only available for substances with 'Substance Type: Decided Structure'. |
3,493,208 compounds |
Data detail
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| Core | NBDC Nikkaji RDF | 10.18908/lsdba.nbdc01530-02-008.V011 |
This RDF data contains the core information of chemical substances such as NIkkaji Number, English/Japanese label, Type, Chemical structure diagram, and same object which were extracted extracted from the Basic Information RDF. We recommend using this RDF together with the 'InChI and InChIKey' 'Canonical SMILES' or 'MOL/SDF' RDF. |
NBDC_NikkajiRDF_core.tar.gz
(308 MB) |
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This RDF data were created from the Basic Information RDF. |
3,671,776 compounds |
Data detail
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| InChI and InChIKey | NBDC Nikkaji RDF | 10.18908/lsdba.nbdc01530-02-002.V011 |
This RDF data contains InChI and InChIKey of chemical substances registered in Nikkaji by using CHEMINF, SIO and other ontologies. We recommend using this RDF together with the Core RDF. |
NBDC_NikkajiRDF_InChI.tar.gz
(510 MB) |
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InChI and InChIKey were obtained from J-GLOBAL Chemical Substance Database. Only available for substances with 'Substance Type: Decided Structure'. |
3,493,208 compounds |
Data detail
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| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata