ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3301665 | Embryonic limb
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX3301664: Embryonic limb

◣ SRX3301665: Embryonic limb

◢ SRX018669: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Cldn34d
Abca3
Abca17
Tmem125
Plekhb1
Tex14
Arl4d
BC107364
E030030I06Rik
Kif2c
LOC666331
Gm11634
Rbks
Babam2
Taf12
Gmeb1
Rdm1
Tmem107
Gsto1
Gsto2
Eapp
Adap1
Rplp2
Slc25a22
Pidd1
Pspn
Clpp
Alkbh7
Atxn2
Usp37
Cnot9
Tmem18
Gtf3c6
Alyref2
Nkx2-6
Maats1
Cox17
Rarb
Guf1
Serpinh1
Rusc1
Taar6
Taar7a
Tmem82
Slc25a34
Sbno1
Gm13286
Gm13283
Gm13271
Kctd1
Tmem115
0610009B22Rik
Gm4981
Dux
Pdcl3
Gm51573
Eva1b
Knop1
Iqck
Bmt2
Sirt4
Gtf3a
Fam32a
Cib3
Psmd12
Pitpnc1
Speer4e
Gm4312
Gm4307
Gm4305
Gm4303
Gm4302
Gm4301
Gtf3c5
Tti2
Iffo1
Sbno2
St3gal3
Mrpl16
Foxp1
Hspa5
Poldip3
Homer3
Ncoa3
Pla2g15
Tmem259
Cnn2
Irf2bpl
Zfp442
Lasp1
Speer4f1
Caap1
Tradd
Hsf4
Fbxl8
B3gnt9
Pigt
Dbndd2
Tma7
Ccdc51
Atrip
Slc35d1
Klhdc8b
Ccdc71
Gm13290
Gm13289
Gm13285
Gm13279
Gm13278
Ifnz
Gm13272
Gm13277
Gm13276
Zfp319
Usb1
Dcaf15
Hes3
Tbc1d17
Pnkp
Akt1s1
Gpcpd1
Ciao2b
Arih2
Borcs6
Stk11
Sigirr
Ctsb
Gm51598
Cyp46a1
Pyroxd1
Hoxa5
Kdm6b
Hoxa3
Hoxa6
Dcdc2a
Hdhd3
Nr6a1
Olfml2a
Tfrc
Nek2
Uqcr11
Mbd3
Fbxo8
Cep44
Cdkn2a
Jund
Iqcn
Zfp770
Gpi1
Npc1
Oxnad1
Dph3
Dedd
Pbx2
Gpsm3
Ager
Cacnb3
Cdkn2aip
Ndufs1
Eef1b2
C330018D20Rik
Kdelr1
Grin2d
Pitx3
Gbf1
Ptpn6
Grcc10
Nanos3
Bmp6
Greb1
Olfr806
Abhd6
Wwox
Setd4
Cbr1
Aadacl2fm1
Kpna1
Tecpr1
Txndc11
Slc14a2
Tent5c
Cox8c
Sympk
Hexb
Acacb
Gzmk
Csf2ra
Marchf3
Fbxw4
H3c8
Tmem211
Il31ra
Pcdh20
Vmn2r102
Mcl1
Olfm1
Slc15a1
H4c8
H2ac10
Slc7a15
H2bc6
Olfr855
Olfr854
Pibf1
Dis3
Tet2
Gm525
Fbxw7
Akirin2
Sspn
Rad23a
Calr
Gcgr
Esr1
Cdv3
Ube2s
Bmpr1b
H3c10
H2bc13
H2ac13
Adgra2
H4c3
H1f6
H1f3
Olfr1274
Tmem231
Gabarapl2
H3c2
H2ac4
Kcnk5
Efnb3
Tmem33
H4c2
H4c1
H3c1
Camk2n1
Fam227b
Dtwd1
Nemf
H4c6
H3c7
H2bc9
Hivep3
Zfp949
H3c3
H2bc3
H4c4
H3c4
Aqp3
Ints3
Pald1
Uri1
Tmem181a
H2bc7
H2ac7
Trim29
Ccdc171
Hmox2
Socs3
Rps29
Lrr1
H1f2
Gpx4
Znfx1
Clec2g
Zfhx2
Thtpa
Fubp3
Tomm5
Slc43a1
Bbs1
Gnb5
H3c6
H2bc8
H2ac8
Xbp1
Mtf2
H4c11
Ifna13
H2bc12
H2ac12
Olfr180
Unk
H3f3b
Maneal
Pdgfrb
Cdx1
Tm7sf3
Med21
H4c9
H2bc11
H2ac11
Prdx6
Aldh9a1
Ilf2
Rasip1
Izumo1
Hoxb13
Zbtb4
Slc35g3
Polr2a
Taf13
Ttc39d
Bcl2a1a
Mkrn1
Fut1
Fgf21
Gm10710
Dchs2
Atp5g1
Bcl2a1b
Ovol2
Abl1
Fitm2
Oasl1
H1f1
Pramel32
Cmip
Mycn
Cerk
Agpat5
Tacr2
Notch4
Prl3c1
Creb3l3
Ubb
Cdk15
Tmem191c
Ier5
Abr
H2bc14
Mylip
Rpgrip1
Dnah7b
Cxcl1
Bmerb1
H3c11
H2bc22
H2ac22
H1f5
Rhobtb1
A930033H14Rik
Oaz2
Adcy5
Adam5
Srp14
Trim7
Cyp26a1
Nudt4
P4ha3
Hspa8
1700037H04Rik
Taf4
Bcl2a1d
Dennd2c
H3c15
H3c14
H2ac19
H2ac18
Klf2
Cd209a
Plbd2
H4bc24
H2bc23
H2ac24
H2ac23
Prxl2b
Gramd1b
Dpagt1
Kat7
Cyth4
Ier2
Vgll2
Tm2d2
Adam9
Usp25
Hoxb4
Xylb
Sub1
Rsph3b
H4c14
H3c13
H2bc18
Pigz
Clcn4
H4c18
Ncor1
Capns1
Mtnr1a
Brwd1
Ing1
Cars2
Ksr1
Rnf19b
Ect2
Trib3
Eif4a2
H4f16
H2aj
Lag3
Ifitm7
Ucp2
Trpm3
Enpp4
Tmem131l
Kcnj16
Mettl14
Malt1
Prkdc
Mcm4
Fndc3b
Ints6
Fam24b
Fam24a
Cuzd1
Pom121l2
Cidea
Gm36210
Snai1
Fbxo44
Fbxo2
Nabp1
Col6a6
Rnf13
Tcp11
Gm20594
Rcc1
Fhl1
Cd44
Ccin
Ap3s2
Mreg
Tll1
Osbpl1a
Tnfsfm13
Tnfsf12
Srsf3
H2bc21
H2ac21
H2ac20
Tmigd1
Baz1b
Mafa
H2bc4
H2ac6
Xpo1
Extl1
Tal2
Dlg4
Acadvl
Hmbs
H2ax
Golga7
Bcat2
Gja4
Gadd45b
Akap8l
Slc13a2
Mdga1
Cic
H4c17
Slc33a1
Galnt2
Habp2
Sertad2
Gmps
Pmepa1
Gtpbp4
Fcgr4
Ttpal
Evi5
Scn8a
Adgre5
Foxo3
Sgf29
Tgm4
Itga5
Tmem42
Gtf2a1
Unc93a2
Gstp2
Gstp1
Hjurp
A730008H23Rik
Kng2
Rarg
Rab34
Proca1
Mrps2
1700007K13Rik
Nfyb
2510009E07Rik
Eif4b
Arrdc2
H1f4
Rgs18
Fbxo6
Ncmap
Klf4
Wdtc1
Hsp90aa1
Ppp3r1
Hnrnpab
Fam53c
Cdc25c
Tctex1d4
Plk3
Btbd19
Tmem50a
Syf2
Rsrp1
Xpnpep1
Tmem167b
Phf5a
Aco2
Rph3al
Plekha7
Dppa2
Nodal
Btg2
Smc3
Sumo1
Mphosph9
2810006K23Rik
Nfrkb
Abcc12
Lrch4
Fbxo24
Asph
Map10
Rrn3
Grasp
Cnn3
Nufip2
Zbtb37
Rab7
H4c12
H2bc15
H2ac15
Angptl8
Ei24
Trim17
H3f4
Nop58
Tob1
Hoxb5
Ccdc92b
Sfi1
Eif4enif1
Jarid2
Rab37
Slc2a9
Cpa1
Smyd2
Npffr2
Gm3448
Gm3417
Arf4
Cited2
Nudt1
Sp8
Hspb8
Zdhhc12
Pkn3
Icam1
C1qbp
Cbr3
Dusp9
Il17b
Ttk
Zfp827
Tsc22d1
Pus1
Ep400
Cyp11a1
Kdm3b
Prdx2
Junb
Ubr4
Pomgnt2
Hsd17b14
Nectin2
Sec22c
Ubxn2a
Atad2b
Ranbp3l
Stra6
Fanci
Gm3435
Acy3
Trim41
Tefm
Pcx
Letmd1
Ggact
Porcn
Slc6a16
Cotl1
Cd37
Zdhhc18
Acsl4
Yars2
Hrob
Calm2
Hexim1
Cbx4
Syngr1
Rps11
Rpl3
Dctn6
Asgr1
Stk3
Caskin1
Tpm2
Ttf1
Cfap77
Rpl11
Pml
Dtx4
Ccn4
Car5a
Alg14
Actn4
Ankrd39
Ppdpf
Atp2a2
Olfr646
Stap2
Septin1
Mpnd
Arl15
Mmp11
Gm867
Chchd10
Sde2
Olfr1359
Kctd2
Atp5h
Mtg2
Chd9
Rnd3
9030025P20Rik
Bcar1
Map7
B4galnt3
Dcpp1
Unc93a
Ubc
Tmem170
Senp3
Hps5
Gtf2h1
Coa7
Pnp
Mybpc3
Pold2
Rab11fip2
Slc17a7
Onecut3
Wdr92
Rai1
Pno1
Utp14b
Acsl3
Zswim8
Chchd1
Hrh2
Thap4
Dgke
Spg20
Rnaset2b
Srsf5
Eif2s3y
Sntb2
Ndufb8
Mbd6
Ddit3
Ceacam12
Insig1
4921509C19Rik
Mettl7a2
Methig1
Higd1c
Zfp143
Stra8
Txnip
Krt15
Krt13
Epha2
Dock6
Cenpm
Msgn1
Haus1
Atp5a1
Sdha
Ccdc127
Ninj2
Rnaset2a
Csrnp2
Ppp1r10
Mrps18b
Atat1
Slc9a1
Slc18b1
Rps12
Tmem135
Tube1
Fam229b
Dnajb9
Uck1
Coro1b
Sh3bp4
Fut8
Sumf1
Ndufs7
Idh3b
Atg14
Npbwr1
1700067K01Rik
Sbp
Mro
4921539E11Rik
Capn3
Carnmt1
Pbld2
Hnrnph3
Llgl2
Gm3415
Gm3402
Ddit4
4930449I24Rik
Btbd16
Klf6
Smarca5
Nsrp1
Hoxa1
Zfp36l1
Gja1
2410137M14Rik
Naglu
Aqp7
Sema4a
Mok
Haus4
Rnf169
Psma6
Acot7
Sbk2
Calm1
Rbm14
Gm21992
Usp4
Msh6
Gpx1
Wsb1
Ube2o
Cphx3
Cphx2
Cphx1
Acp6
Vmn2r72
Ss18
Sgk1
Rnf103
Tas2r134
Spata33
Myrf
Chmp1a
Gtf2a1l
Gtf2b
Ctsl
Sacm1l
Lrrc10b
Dcaf4
Psmd7
D230025D16Rik
Zfp532
Tro
C1ra
Eif4h
Hsp90ab1
Rfc5
Septin11
Prdm10
H2-DMa
Gm17660
Brd2
Trim40
Trim31
Raf1
Ifna6
Ifna5
Fus
Taok3
Aplp2
Atp1a1
Kdm3a
Blmh
Mrpl58
Gm648
Jpt1
Tbc1d10b
Mylpf
Tcim
Fbxo31
Mpp7
Gadd45a
Gpr152
Cabp4
Rsc1a1
Dpysl3
Jam2
Arg1
Ptprcap
Prdx1
Sec31b
Actb
Pick1
Hbegf
Eif4g2
Mettl16
Stk35
Rpl17
BC031181
Gapdh
Dnajc27
Dgat2
Nlrp4c
Srgn
Cfap74
Ctdsp2
AU018091
Atp6v0d1
Agrp
Slc25a13
Clu
Mat2a
Tubb4b
Stpg3
Slc34a3
Ptprf
Ifna7
Fam166a
Mrm2
S1pr2
Tcte3
Slc4a9
Phc1
Ermard
BC005537
Kank3
Id3
Twsg1
Dhx8
Cyfip2
Zfp791
Elavl3
Thrsp
Copz1
Arhgap19
Ccng2
Ell3
Trmt1
Nacc1
Nanog
Sertad1
Magel2
Amy2a5
Amy2a4
Amy2a3
Amy2a2
Errfi1
Wif1
Adam32
Pltp
Tmbim1
Srsf2
Mfsd11
Mettl23
Jmjd6
Cox7a2l
Men1
Map4k2
Zfp740
Csad
Sf3b1
Eif4a1
Cd68
Mknk2
Mib2
Mis18bp1
Aven
Tmem230
Tmem129
Tacc3
Slbp
Rsph3a
Pcna
Cds2
Dusp1
Appl2
Nphs1
Kirrel2
Sepsecs
Nme1
Zc3h12a
Tmed10
Tbl1xr1
P4ha1
Cdk5rap2
Slx1b
Bola2
Skp1
Gucy1a2
Hagh
Fahd1
Gas1
G0s2
Fads1
Ndufaf3
Impdh2
Dhx9
Dalrd3
Mypn
Itga3
Bcl2l11
Misp3
Itch
Snrnp35
Rilpl2
Cdh12
Tnfrsf19
Ehd4
Dag1
Zswim3
Slc35b2
Ccdc58
Acot8
Etnk2
Dgat1
Ccdc102a
Trpm1
Sorbs1
Prdm14
Msi1
Slc12a7
Kcnk4
Gpr137
Bad
Chn2
Rab7b
Nipal1
Cnga1
Prpf38b
Ankrd11
Slc29a1
Mymx
Lipf
Smdt1
Ndufa6
Lefty1
Atxn7l3b
Amd2
Amd1
Klf10
Btg1
Ghdc
Selenok
Hnrnpa2b1
Cbx3
Snx6
Gtf2f1
Adck5
Pik3c2a
Arl6ip1
H2-M5
Tpst1
Faim
Dnaja1
Znhit1
Vstm4
Tnrc18
Plod3
Selenbp1
Amacr
Psmb7
Zfp119a
Mrpl37
Eef2
Dapk3
Cyb5rl
Plekhf2
Ago2
Shank1
Clec11a
Steap4
Pknox1
Hgsnat
Zfp980
Cdh1