ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: Rara | Average
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◣ Rara: Average

◢ SRX3301664: Embryonic limb

◢ SRX3301665: Embryonic limb

◢ SRX018669: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Eapp
H4c8
Tex14
Adgra2
H4c3
Rbks
Babam2
Plekhb1
Rarb
Hivep3
Oxnad1
Dph3
Slc15a1
Trim29
Rps29
Sspn
Fubp3
Tomm5
H3c6
Mtf2
H3f3b
Rdm1
Polr2a
Ilf2
Cdx1
Mkrn1
H4c4
H3c7
H2bc9
Cdk15
Tmem191c
Tfrc
H3c11
Alkbh7
Adam5
H4c11
H3c15
H3c14
Clcn4
Oasl1
Ing1
Hspa5
Enpp4
H3c2
Mettl14
H4c18
Trib3
H4c9
Gm20594
H3c3
Gnb5
H2ac19
H2ac18
H2bc21
H2ac21
H2ac20
H4f16
H3c13
H2bc18
H2bc4
H2ac6
Slc43a1
H2ax
Rhobtb1
Bmt2
Gtpbp4
Jund
Ttpal
H2bc12
H2ac12
Tcp11
Arrdc2
H1f4
Nabp1
Hnrnpab
Rsrp1
Phf5a
Aco2
H3c10
H4c17
Btg2
Ubb
Mphosph9
2810006K23Rik
H1f2
Tm7sf3
Hspa8
Taf4
H4c1
Scn8a
Calr
Zbtb37
Fam53c
H4c12
Tob1
Ints6
Taf13
Gm3448
Gm3417
Arf4
H3c4
Gtf2a1
Icam1
Dusp9
Ttk
H4c2
Gm3435
Pcx
Porcn
Slc6a16
Zdhhc18
Calm2
Hexim1
Rpl3
Stk3
Ppdpf
Atp2a2
Arl15
Sde2
Nufip2
Ifitm7
Bmerb1
9030025P20Rik
Junb
Dcpp1
Pnp
Utp14b
Acsl3
Hsp90aa1
Srsf5
Sntb2
Insig1
H3c1
Haus1
Atp5a1
Sdha
Ccdc127
Csrnp2
Cbx4
Ppp1r10
Mrps18b
Slc9a1
Dnajb9
Uck1
Sumf1
Nek2
Pbld2
Ddit4
Klf6
H2bc6
Poldip3
Calm1
Rbm14
Gm21992
Gpx1
Acp6
Sgk1
Sub1
Spata33
H4c14
Chmp1a
Gtf2a1l
Gtf2b
Ctsl
Sacm1l
Ier2
Znfx1
Fus
Raf1
Aplp2
Atp1a1
Jpt1
Mylpf
Mpp7
Gadd45a
Hrob
Cited2
H2ac4
Prdx1
Actb
Rnaset2b
Eif4g2
Eif2s3y
Gpcpd1
Rnf19b
Tsc22d1
Dgat2
AU018091
Clu
Mat2a
Tubb4b
Tcte3
Ermard
BC005537
Rnaset2a
H2bc22
H2bc11
H2ac22
H2ac11
Errfi1
Srsf2
Mfsd11
Sfi1
Cox17
Sf3b1
Eif4a1
Mknk2
Mib2
Smarca5
Pcna
Arl4d
Smc3
H3c8
P4ha1
H1f3
Mcl1
Hagh
Guf1
Fahd1
Letmd1
Fbxo31
Wsb1
Dag1
Hsp90ab1
Dhx8
Zfp36l1
Dedd
Amd2
Amd1
Btg1
Hnrnpa2b1
Cbx3
Gtf2f1
Arl6ip1
H2bc13
H2ac13
Srsf3
Selenbp1
Amacr
Phc1
Ndufa6
Mrpl37
Cyb5rl
Trp53inp1
Ftl1
Luzp1
Tas2r134
Rab8a
H2bc1
H2ac1
H2ac10
Slc38a2
Vegfa
Sephs2
Ifrd1
Ier5
H2bc8
H2ac8
Tuba4a
H4bc24
H2bc23
H2ac24
H2ac23
Slbp
Spg11
Gcm2
Ddx5
Cep95
Marchf3
Gtf2a2
Dmxl1
Mill1
Hjurp
A730008H23Rik
Lman1
Dhx32
Gtf3c6
Kcnn2
Zfand5
Rita1
Slc38a5
Cog6
Tnrc6c
Mbd3
Fxyd1
Tob2
Prdm14
Rhob
Pabpc1
Sqstm1
Fos
Ppp1r3c
Skp1
Zfp710
Acly
Atxn2
Zfp438
Klf7
Dusp1
Cnga1
Mymx
Cpt1a
Vcl
Peli1
Msh6
Rnd3
Rcbtb1
Dennd6a
Vamp1
Slc25a3
Etv3l
H4c6
Pigt
Katna1
Cep43
Rps12
Slc25a39
Muc1
Lipe
Gapdh
Ep400
H2bc7
H2ac7
Dhcr24
Msmo1
Dnaja1
Wsb2
Eef1a1
Ubc
Hnrnph1
Inmt
Mad2l1bp
H2bc15
H2ac15
Pyroxd1
Ccnyl1
Mafb
Slc9a3r1
Maml1
Cfl2
Ghdc
Epha2
Abr
P4hb
Dppa2
Rps3
Glul
Rps20
Socs3
Jun
Sap18b
Sap18
Plk2
Mterf1b
Ncl
H2-M5
Clic4
Snrpe
Fam32a
Mbtps1
Traf7
Dhx9
Herc2
Pdia3
Catsper2
Styxl1
Pdcl3
Mdh2
Ndufs7
Cebpa
Cirbp
Gfpt2
Ppp1r2
Ctnnb1
H2bc14
Sirt3
Psmd13
Mterf1a
Sirt1
Ttc41
Kmt5b
Hsp90b1
Avpr1a
Ubap1
Ptpmt1
Impdh2
Tra2b
Cdkn2aip
Ankrd11
Idi1
Ipmk
St3gal3
Rnf103
Gria3
Trpm3
Ndufs8
Itpr1
Kctd5
Frmd6
Grcc10
Fasn
Il1b
Uspl1
Tcta
Rhoa
Wdr77
Atp5pb
Ppp1r15a
Plekha4
Ankrd28
Chd9
Cxcl5
Mertk
Susd6
Hhex
Urgcp
Pcmtd1
Lilr4b
Usp37
Cnot9
Gls
Smg5
Atp5e
Afg3l1
Tsc22d2
Caap1
Ndel1
Abcb7
Map1lc3b
Slc25a30
Napepld
Rps6
Ifna6
Gnl2
Hnrnpu
Sesn2
Gpr141
Paxip1
H2bc3
Slc44a3
Hmga1b
Hmga1
Klf10
Por
Erf
Slc25a51
Pdhx
Apip
Klhl21
Gas1
Vgll4
Txnip
Fdx1
Mrpl1
Mylip
Ctnna3
Chordc1
Dusp5
Chchd2
Hspa1l
Hspa1a
Depdc1a
Acer2
Nfkbia
Gpx4
Dnajb1
Dnajb4
Med23
U2surp
Ncoa3
Mrpl39
Kdm4c
Ciao2b
Rpl23
Man1a
Kntc1
Fyco1
Arhgap19
Acy3
Proca1
Fth1
Dgat1
Musk
Atp1b2
Mpc1
Sertad2
Serinc3
Slc31a1
Fkbp15
Rps2
Prmt8
Eif4a2
Txn1
Tagap1
Dok4
Cd81
Rpl7a
Med22
Ccdc110
Rcl1
H2-Bl
D230025D16Rik
Whamm
Fmc1
Exosc2
Ern1
Zfp119b
Eif3a
Cyp2d9
Actn4
Nudt4
Taf1d
Alox12b
4931406C07Rik
Rpl13
Gadd45g
Smyd4
Rpa1
Zswim3
Acot8
Rnf125
Kdm5a
Adpgk
Irs2
Hspa1b
Slc2a9
Degs1
Cebpd
Rplp0
Dpp9
Rusc2
Sertad1
Rps27rt
Rps27
Rab13
Atp5g3
Rps24
H3f3a
Ddx3x
Ccnt1
Nrd1
Ppia
Ulk2
Ncoa4
Glce
Gclc
Mapkapk2
Tpcn2
Pcif1
Snx18
Cpm
Mak16
Vmn2r4
Rpl9
Nfe2l2
Lias
Tti2
Ly6l
Rps9
Homer3
Igfbp2
Chchd1
Sgf29
Rbbp6
Cyren
Baiap2
Acad12
Mrps28
Fanci
Actg1
Rcn2
Arrdc3
Scnn1g
Map2k4
Npm1
Rara
Eif4e
Ankrd39
Nr6a1
Asb2
Nsrp1
Rbm39
Pigl
Ncor1
Mapk1
Klf2
Pik3r3
Zfp119a
Ggcx
Fam25c
Vps52
Rps18
Pdk1
Ndufaf3
Gadd45b
Abcb8
Tuba1c
Slc5a3
Rbm4b
Mrps6
Eef2
Slc20a1
Hmox2
Midn
Defb8
Uqcrc1
Shld2
Plec
Map2k2
Glud1
Adk
Zfp959
Rpl8
Rtn3
Jak1
Gabbr1
Zfp963
Tmem39a
Smurf2
Slc16a10
Ost4
Trappc3
Rpl17
Sod1
Wdr82
Tnnt1
Ddx24
Csrnp1
Plk3
Rab33b
Nfe2l1
Naca
Eif1
Cxcr3
Dip2b
Taf4b
Mapk14
Nfkbiz
Unc5b
Slc2a1
Epc1
Dnajc1
Gpat4
Nme1
Ctdp1
Ccar1
Tango2
Med21
Ksr1
Cpsf1
Cmas
Etfrf1
Cfap20dc
Casc1
Ssbp1
Rnf38
Id3
Mob1b
Hint1
H2-Q8
H2-Q6
Bsg
Ttc7
Ppib
B2m
Rnd1
Pfn1
Rhou
Tiparp
Edrf1
Sugt1
Setd5
Commd1
Taco1
Cat
Spry4
Rpl15
Pcf11
Nkiras1
2410002F23Rik
Ppp6r3
Paip2
Irf8
Knl1
Kcnk5
Phf11d
Lsm14a
Snrpg
Pgrmc1
B4galt3
Lgr4
Ubr3
Snorc
Sgpl1
Pdlim7
Herpud1
Tc2n
Ptma
Net1
Knop1
Iqck
Fbxo8
Cep44
Bclaf1
Acer3
Usp53
Ccdc71
Slx1b
Rapgef6
Psme4
Srp19
Mlxipl
Atp5b
Nop58
Pik3c2a
Fam43a
Rpl41
Kbtbd7
Hs3st3b1
Wdr25
Wars
Top1
Ell2
Ctbs
H2aw
Fam71f1
Odc1
Ywhag
Mtr
Atp5j
Zswim8
Tmem267
Cyp2f2
Tgoln2
Tgoln1
Flnb
Esyt2
Manf
Slc35d1
Ints14
G3bp1
Ptpa
Crat
Prss51
Nt5dc3
Atg4d
Rab5b
Rpl10a
Ints8
Foxp2
Plpp1
Rnf149
Mtfr1
Mllt6
Ddit3
H2az1
Nfyb
Rab43
Dynll1
Sec22b
Alg1
Irak2
Zfp770
Ndufa2
Ik
Fra10ac1
Selenok
Mdk
Endog
Trim34a
Crot
Bcl2l1
Kansl2
Fut8
Becn1
Ahcy
Trmt2a
Ranbp1
Ptp4a1
Pih1d1
Aldh16a1
Olfr222
Lpar5
Tab1
Ulk1
Sp1
Gpi1
Arc
Lrrc8a
Sorbs1
Rnase4
Crybg2
Ang
Mrpl45
Mpv17l2
Tpi1
Agbl5
Rasl10b
Hif1an
Cebpb
Zfp930
Tpcn1
Neu1
Iqcd
Rps15
Eprs
Tspan9
Stra8
Slc18a1
Rack1
Atp6v1b2
Atl2
Zp1
Rps3a1
Cltc
Stat2
Id2
Snx29
Shox2
Gnai2
Stbd1
Rps28
Mrpl44
H2-K1
Ino80c
Ddost
Nr3c2
Hspb8
Atp6v0a1
Usp42
Trf
Akap8l
Daam1
Cxxc4
Cped1
Cnbp
Srp54a
Rhot1
Crlf3
Timm22
Matr3
Ddx20
Hmgcr
Arih2
Srsf6
Sptan1
Slc36a1
Rbp4
Dytn
Dennd10
Tmem126a
Fbxo15
Dbi
3110009E18Rik
Tmem175
Tbc1d13
Pcnp
Nqo2
Gak
Ugdh
Rbpj
Dtwd2
Atad2b
Cryzl2
Slc7a5
Selenop
Rffl
F2r
Rpl22l1
Pradc1
Ppp1r8
Cct7
Ube2h
Nasp
Pdia4
Ier5l
Hif1a
Depdc7
Ccnl1
Bbs2
Pbx2
Pak3
Isoc2a
Cap1
Stard5
Ripk2
Cln8
Slx4ip
Plcb1
Tdp2
Scp2
Cop1
Cd164
Acot13
Dusp6
Ddb1
Arhgap29
Unk
Jarid2
Cdh1
Cdc5l
Amotl2
Polr3e
Fam120a
Snrpb
Brap
Acad10
Tsnaxip1
Ranbp10
Pdcd4
Naaa
Jup
Hnrnpc
Dync1h1
Clk1
Phf14
Ndufa4
Mrpl15
Edem1
Cdc42
Angptl4
Zc3h13
Spg7
Slc3a2
Selenos
Fn1
Atp1b1
Vmn1r205
Rsbn1l
Hacd2
Fzd5
Atg10
Abca14
Raly
Pts
Preb
Rpl6
Olfr813
Nfat5
Cotl1
Calu
Als2
Sec61a2
Taok1
Srsf1
Slc30a9
Rps19
Ccdc117
Wdr45b
Tpt1
Tmem270
Pikfyve
Mapk8
Map2k1
Idh1
Tnfrsf1b
Rps8
Hmgb2
Rnf169
Rabggtb
Fech
Aldoa
Upf3a
Hsph1
Cyp2d10
Chmp5
Bag1
Ccdc12
Rps7
Mtarc2
Wipf2
Nedd9
Tmem183a
Pex11g
Kpna2
Atp10d
Rpl37a
Rnf10
Pttg1ip
Mfsd14a
Igfbp4
Denr
Alyref2
LOC114841036
Fkbp2
Myo6
Lbh
Iqgap3
Sppl2a
Dpy19l4
Cox5b
Txnrd1
Dnajc19
Cstf2t
Azin1
Acp5
4833420G17Rik
Tmem199
Poldip2
Chmp2a