ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX118693 | mESC derived neural cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX3301664: Embryonic limb

◢ SRX3301665: Embryonic limb

◢ SRX018669: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◣ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Greb1
Olfr806
Setd4
Cbr1
Abhd6
Acacb
Wwox
Aadacl2fm1
Slc7a15
Marchf3
Tmem211
Prl3c1
Olfr855
Olfr854
Fam227b
Dtwd1
Zfp949
Nemf
Tecpr1
Olfm1
Slc14a2
Sympk
Bmpr1b
Fbxw7
Malt1
Akirin2
Nkx2-6
Tent5c
Prxl2b
Maneal
Tmem33
Rasip1
Izumo1
Fut1
Fgf21
Cox8c
Olfr180
Npffr2
P4ha3
Clec2g
Znhit1
Plod3
Ovol2
Alg14
Vstm4
Rps29
Lrr1
Tll1
Prkdc
Mcm4
Ilf2
Mycn
Zdhhc12
Pkn3
Npbwr1
Gcgr
Ctnna3
Sycp2l
Gcm2
Tpm2
Ptbp2
Tmem131l
Nox3
Kpna1
Map10
Adam5
Dcpp1
Sacm1l
Edf1
Traf2
Jund
Iqcn
Cxcl1
H3c10
H2bc13
H2ac13
Olfr1359
Gzmk
Trim7
Cbr3
Trim41
Olfr1168
Cdrt4
Fbxo31
Naaa
Gnb5
Npy5r
Slc28a2
Slc13a2
Esr1
Mrln
Cpa1
Klf4
Kctd2
Atp5h
Paqr4
Pkmyt1
Pom121l2
Stk11
Sbno2
Nup153
Kcnj16
Atp5g1
Fam71f1
Ptgdr
Rasgrf1
4930563M21Rik
Rnase4
Ang
Gm525
Fam24b
Fam24a
Cuzd1
Cldn34d
Il31ra
Grap
Clcn4
Cyp27a1
Camk2g
Tacr2
Vgll2
Prkg1
Ccin
Pcdh20
Scn8a
Ifna6
Ifna5
Ifna7
Ifna11
4921509C19Rik
H3c2
H2ac4
H4c2
H4c1
H3c1
H1f1
Dlg4
Acadvl
Fam181b
Trim29
Ss18
Rph3al
Abcc12
Snrnp35
Rilpl2
Rab34
Proca1
Abt1
Gm17660
Asgr1
Ccn4
Fhl1
Tmigd1
Amy2a5
Amy2a4
Amy2a3
Amy2a2
Wdr35
Zfp300
Akap8l
Cyth4
Mrpl58
Nt5c2
Liph
Trib3
Lrch4
Fbxo24
Sh3bp4
Dmrtc1c2
Dmrtc1c1
Gja4
H3c8
H4c8
H2ac10
Sspn
Mrps2
1700007K13Rik
Fam83a
Pde12
Mettl14
Habp2
Tro
AU018091
Kcnn2
Enpep
Slc5a6
Cad
Atraid
Pla2g4d
Gucy1a2
Runx2
Gm3415
Gm3402
4930449I24Rik
Sumf1
Best2
Carnmt1
B4galnt3
Trim17
H3f4
Cd44
Vmn2r102
Tmem125
Usp25
Tgm4
Tmem42
Xpnpep1
Nfrkb
Hps5
Gtf2h1
Nipal1
Cnga1
Htr7
Fga
Fgg
Birc5
Kcnk9
Tgfb2
Wdr3
Gdap2
Cables1
Defb38
Slc1a2
Ak5
Sbk2
Timm22
Nxn
Zfp692
Gpihbp1
Slfn4
Npm2
Sncaip
Camk2n1
Hexb
Wif1
Btrc
Med16
Cfd
Fmc1
Amotl1
Harbi1
Atg13
Creb3l3
Cyp26a1
Rgs18
Magel2
Limch1
Sgcz
Mkrn2os
Dynlt3
Sp8
Hoxb1
Fbxo8
Cep44
Rad51ap1
D6Wsu163e
Aurkb
Fndc7
Rara
Setbp1
Krt75
Ppp3r1
Ccdc58
Ppp1r37
Tube1
Fam229b
Pisd
Setd1a
Orai3
Cfap126
Ppl
Trim58
Hes7
Aloxe3
Dcaf5
Brpf1
Calm4
Gm648
Nlrp4c
Gm14151
Adamts19
Ptgr1
Kcnb2
Rrn3
Tbcel
Onecut3
Hemgn
Gas1
Phc2
Ptges
Fcrl6
Ccnt2
Dpysl3
Dbr1
Armc8
Rnase12
Olfr750
Safb
Safb2
Rbks
Babam2
Npas4
H4f16
H2aj
Obi1
Mrgprx2
C87436
H2bc6
H4c4
H3c4
Ms4a4b
Plekhb1
Hoxa1
Exosc2
Rasl10b
E030030I06Rik
Tdrd7
Rplp2
Slc25a22
Pidd1
Gpatch8
Dlgap3
Rad23a
Calr
Rsph3b
Ube2b
Cdkl3
Atxn2
Sorbs1
Txndc11
Csf2ra
Fbxw4
Tex14
Mcl1
Slc15a1
Pibf1
Dis3
Tet2
Eapp
Arl4d
Cdv3
Ube2s
Oxnad1
Dph3
Adgra2
H4c3
H1f6
H1f3
Olfr1274
Tmem231
Gabarapl2
Kcnk5
Efnb3
H4c6
H3c7
H2bc9
Rarb
Hivep3
H3c3
H2bc3
Aqp3
Ints3
Pald1
Uri1
BC107364
Tmem181a
H2bc7
H2ac7
Ccdc171
Hmox2
Socs3
H1f2
Gpx4
Znfx1
Zfhx2
Thtpa
Fubp3
Tomm5
Slc43a1
Bbs1
H3c6
H2bc8
H2ac8
Xbp1
Mtf2
H4c11
Ifna13
H2bc12
H2ac12
Unk
H3f3b
Pdgfrb
Cdx1
Tm7sf3
Med21
Rdm1
H4c9
H2bc11
H2ac11
Prdx6
Aldh9a1
LOC666331
Gm11634
Hoxb13
Zbtb4
Slc35g3
Polr2a
Taf13
Ttc39d
Bcl2a1a
Mkrn1
Gm10710
Dchs2
Bcl2a1b
Abca3
Abl1
Fitm2
Oasl1
Pramel32
Cmip
Cerk
Abca17
Agpat5
Notch4
Ubb
Cdk15
Tmem191c
Tfrc
Ier5
Abr
H2bc14
Mylip
Rpgrip1
Dnah7b
Bmerb1
H3c11
H2bc22
H2ac22
H1f5
Rhobtb1
A930033H14Rik
Pspn
Clpp
Alkbh7
Oaz2
Adcy5
Srp14
Poldip3
Nudt4
Hspa8
1700037H04Rik
Taf4
Bcl2a1d
Tmem18
Dennd2c
H3c15
H3c14
H2ac19
H2ac18
Klf2
Cd209a
Plbd2
H4bc24
H2bc23
H2ac24
H2ac23
Gramd1b
Dpagt1
Kat7
Ier2
Tm2d2
Adam9
Hoxb4
Xylb
Sub1
H4c14
H3c13
H2bc18
Pigz
H4c18
Ncor1
Capns1
Mtnr1a
Brwd1
Ing1
Cars2
Ksr1
Foxp1
Rnf19b
Ect2
Eif4a2
Lag3
Ifitm7
Ucp2
Trpm3
Hspa5
Enpp4
Taf12
Gmeb1
Fndc3b
Ints6
Cidea
Gm36210
Snai1
Fbxo44
Fbxo2
Nabp1
Col6a6
Rnf13
Tcp11
Gm20594
Rcc1
Ap3s2
Mreg
Nek2
Osbpl1a
Tnfsfm13
Tnfsf12
Srsf3
H2bc21
H2ac21
H2ac20
Baz1b
Mafa
H2bc4
H2ac6
Xpo1
Extl1
Tal2
Hmbs
H2ax
Golga7
Bcat2
Gadd45b
Mdga1
Cic
H4c17
Bmt2
Slc33a1
Galnt2
Sertad2
Gmps
Pmepa1
Gtpbp4
Fcgr4
Ttpal
Evi5
Adgre5
Foxo3
Taar6
Sgf29
Lasp1
Itga5
Gtf2a1
Unc93a2
Gstp2
Gstp1
Hjurp
A730008H23Rik
Kng2
Rarg
Nfyb
2510009E07Rik
Eif4b
Arrdc2
H1f4
Fbxo6
Ncmap
Wdtc1
Hsp90aa1
Hnrnpab
Fam53c
Cdc25c
Tctex1d4
Plk3
Btbd19
Tmem50a
Syf2
Rsrp1
Tmem167b
Phf5a
Aco2
Psmd12
Plekha7
Pitpnc1
Dppa2
Nodal
Btg2
Smc3
Sumo1
Mphosph9
2810006K23Rik
Rusc1
Asph
Grasp
Cnn3
Nufip2
Zbtb37
Rab7
H4c12
H2bc15
H2ac15
Angptl8
Ei24
Nop58
Tob1
Hoxb5
Ccdc92b
Sfi1
Eif4enif1
Jarid2
Rab37
Slc2a9
Smyd2
Gm3448
Gm3417
Arf4
Cited2
Nudt1
Hspb8
Icam1
C1qbp
Dusp9
Il17b
Ttk
Zfp827
Tsc22d1
Pus1
Ep400
Cyp11a1
Kdm3b
Prdx2
Junb
Ubr4
Pomgnt2
Hsd17b14
Nectin2
Sec22c
Ubxn2a
Atad2b
Usp37
Ranbp3l
Stra6
Fanci
Gm3435
Acy3
Tefm
Pcx
Letmd1
Ggact
Porcn
Slc6a16
Cotl1
Cd37
Zdhhc18
Acsl4
Yars2
Hrob
Calm2
Hexim1
Cbx4
Syngr1
Rps11
Rpl3
Dctn6
Stk3
Caskin1
Ttf1
Cfap77
Rpl11
Pml
Dtx4
Car5a
Actn4
Ankrd39
Taar7a
Ppdpf
Atp2a2
Olfr646
Stap2
Septin1
Mpnd
Arl15
Mmp11
Gm867
Chchd10
Sde2
Sirt4
Mtg2
Chd9
Rnd3
9030025P20Rik
Bcar1
Map7
Unc93a
Ubc
Tmem170
Senp3
Coa7
Pnp
Mybpc3
Pold2
Rab11fip2
Slc17a7
Wdr92
Rai1
Pno1
Utp14b
Acsl3
Zswim8
Chchd1
Hrh2
Thap4
Dgke
Spg20
Rnaset2b
Srsf5
Eif2s3y
Sntb2
Ndufb8
Mbd6
Ddit3
Ceacam12
Insig1
Mettl7a2
Methig1
Higd1c
Zfp143
Stra8
Txnip
Krt15
Krt13
Epha2
Dock6
Cenpm
Msgn1
Haus1
Atp5a1
Sdha
Ccdc127
Ninj2
Rnaset2a
Csrnp2
Ppp1r10
Mrps18b
Atat1
Slc9a1
Slc18b1
Rps12
Tmem135
Dnajb9
Uck1
Coro1b
Fut8
Ndufs7
Idh3b
Atg14
1700067K01Rik
Sbp
Mro
4921539E11Rik
Capn3
Pbld2
Hnrnph3
Llgl2
Ddit4
Btbd16
Klf6
Smarca5
Nsrp1
Zfp36l1
Gja1
2410137M14Rik
Naglu
Aqp7
Sema4a
Mok
Haus4
Rnf169
Psma6
Acot7
Calm1
Rbm14
Gm21992
Usp4
Msh6
Gpx1
Wsb1
Ube2o
Cphx3
Cphx2
Cphx1
Acp6
Vmn2r72
Sgk1
Rnf103
Tas2r134
Spata33
Myrf
Chmp1a
Gtf2a1l
Gtf2b
Ctsl
Lrrc10b
Dcaf4
Psmd7
D230025D16Rik
Zfp532
C1ra
Eif4h
Hsp90ab1
Rfc5
Septin11
Prdm10
H2-DMa
Brd2
Trim40
Trim31
Raf1
Fus
Taok3
Aplp2
Atp1a1
Kdm3a
Guf1
Blmh
Jpt1
Tbc1d10b
Mylpf
Tcim
Mpp7
Gadd45a
Gpr152
Cabp4
Rsc1a1
Jam2
Arg1
Ptprcap
Prdx1
Sec31b
Actb
Pick1
Hbegf
Eif4g2
Mettl16
Gpcpd1
Stk35
Rpl17
BC031181
Gapdh
Dnajc27
Dgat2
Srgn
Cfap74
Ctdsp2
Atp6v0d1
Agrp
Slc25a13
Clu
Mat2a
Tubb4b
Stpg3
Slc34a3
Ptprf
Fam166a
Mrm2
S1pr2
Tcte3
Slc4a9
Phc1
Fam32a
Ermard
Cib3
BC005537
Kank3
Id3
Twsg1
Dhx8
Cyfip2
Zfp791
Elavl3
Thrsp
Copz1
Arhgap19
Ccng2
Ell3
Trmt1
Nacc1
Nanog
Sertad1
Errfi1
Adam32
Pltp
Tmbim1
Srsf2
Mfsd11
Mettl23
Jmjd6
Cox7a2l
Men1
Map4k2
Zfp740
Csad
Maats1
Cox17
Sf3b1
Eif4a1
Cd68
Serpinh1
Mknk2
Mib2
Mis18bp1
Aven
Tmem230
Tmem129
Tacc3
Slbp
Rsph3a
Pcna
Cds2
Dusp1
Appl2
Nphs1
Kirrel2
Sepsecs
Nme1
Zc3h12a
Tmed10
Tbl1xr1
P4ha1
Cdk5rap2
Slx1b
Bola2
Skp1
Hagh
Fahd1
G0s2
Fads1
Adap1
Ndufaf3
Impdh2
Dhx9
Dalrd3
Mypn
Itga3
Bcl2l11
Misp3
Itch
Cdh12
Tnfrsf19
Ehd4
Dag1
Zswim3
Slc35b2
Acot8
Etnk2
Dgat1
Ccdc102a
Trpm1
Prdm14
Msi1
Slc12a7
Kcnk4
Gpr137
Bad
Chn2
Rab7b
Prpf38b
Dedd
Ankrd11
Slc29a1
Mymx
Lipf
Smdt1
Ndufa6
Lefty1
Atxn7l3b
Amd2
Amd1
Klf10
Tmem107
Btg1
Ghdc
Selenok
Hnrnpa2b1
Cbx3
Snx6
Gtf2f1
Adck5
Pik3c2a
Arl6ip1
H2-M5
Uqcr11
Tpst1
Mbd3
Faim
Dnaja1
Tnrc18
Selenbp1
Amacr