ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX520468 | F9
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX3301664: Embryonic limb

◢ SRX3301665: Embryonic limb

◢ SRX018669: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◣ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Slc15a1
Efnb3
Bcl2a1a
Gabarapl2
Bcl2a1b
Adgra2
Aqp3
Bcl2a1d
Atp11b
Mtf2
Hivep3
Cdk15
Rhobtb1
A930033H14Rik
Mkrn1
Tmem181a
Tctn1
Tcstv3
Kcnk5
C1qbp
Asmt
Prdx6
Ints3
Notch4
Fubp3
Oxnad1
Dph3
Capns1
Rarb
Pmepa1
Tmem191c
Cdx1
Cidea
Enpp4
Tomm5
Hoxb13
Sntb2
Nanog
Cyp26a1
Abl1
Rpgrip1
Nodal
Dusp9
Tbc1d10b
Mylpf
Slc43a1
Dppa2
Calr
Kat7
Phf5a
Aco2
Zfp827
Znfx1
Klf2
Rfc5
Ifitm7
Bmerb1
Ttk
Ect2
Dpp4
Foxo3
Jam2
Gpx4
Cic
Dcaf4
Kng2
Itpk1
Acsl4
Phc1
Mafa
Rarg
Rnf13
Cldn19
Gja1
Tmem235
Foxp1
Rai1
Tnfrsf19
Tcp11
Cenpm
Porcn
Exosc5
Bckdha
Socs3
Kank3
Ggact
Fstl3
Plekhb1
Creld1
Nfyb
Trmt1
Gm36210
Zfp532
Galnt2
Tm7sf3
Extl1
Rbks
Babam2
Fbxo6
Phf11d
Wsb2
Arhgap27
Ptk7
Sgf29
Baz1b
Msh6
Uck1
Nsd1
Evi5
Zdhhc18
Misp3
Ube2o
Muc1
Ttpal
Itga5
Hps5
Gtf2h1
Tle5
Mreg
Mib2
Nudt1
Gipc1
Brwd1
Ncmap
Bcar1
Kcnk4
Znrf1
Tfrc
Mis18bp1
Eif4e
Prr5
Hrob
Dok4
Sepsecs
Slc6a16
Cd37
Gpr152
Cabp4
Taok3
Cacng6
Ksr1
Arhgap19
Abr
Lpar5
Gm867
Chchd10
Prdm14
Mok
Zfp979
Mgat3
Serpinf2
Ltn1
Rwdd2b
Tmem135
Eif4e1b
Zc3h3
Coro1b
Ptprcap
Vash1
Odf3l1
S1pr2
Fam81a
Ghdc
Ubxn2a
Ndufa6
Atg14
Cxcr3
Lgals9
Nr6a1
Tefm
Bmp4
Psmb7
Sec22c
Xylb
Gtpbp4
Vars
D17H6S56E-5
Ccdc113
Taf13
Pspn
Alkbh7
Ankle2
Spry2
Adgre5
Smpd4
Slc29a1
Mymx
Men1
Acp6
Thrsp
Eras
Dhx32
Fgf1
Txlng
Zfp980
Gtf2h4
Mtg2
Crybg2
Pgbd5
Fam25c
Prmt8
Cmtm7
Spata33
Chmp1a
Notum
Dnajb6
Ccdc102a
Adgrg5
Spred2
Dennd6a
Drd4
Crlf2
Klhl34
Max
Ankrd44
Tnnt1
Hspb8
Plk3
Arf4
Ints11
Cptp
R3hdm2
Rnf125
Nphs1
Kazn
Abcb7
Rfx2
Rab8a
Gstp2
Rxrg
Sdha
Ccdc127
Atg9b
Abcb8
Ammecr1l
N4bp1
Hoxa1
Kxd1
Fkbp8
Sap30
Sub1
Twistnb
Gm20939
Jarid2
Dock6
Agrp
Bmt2
Mbd6
Ddit3
Dedd
Slc25a39
Lama3
Oaz2
Ago2
Ptpmt1
Itpka
Icam1
Trim7
Khdrbs1
Zfp219
Pbld2
Hnrnph3
Ttll3
Ttll10
Ptprz1
Zyg11a
Med13l
Letmd1
Nupl2
Tmem125
Dag1
4921517D22Rik
Tmem116
Erp29
Slc39a2
Cog6
Id3
Nudt3
Cpt1a
Bcl11b
Smim40
Mllt6
Rab39
Dnaaf3
Rbm14
Gm21992
Atg2a
Ppp2r5b
U2surp
Brsk1
H2-Bl
Mpc1
Slc35f2
Ush1g
Otop2
Def6
Gm18905
Arhgef26
Nek2
Tlcd1
Nek8
Lipe
Sall2
Hagh
Fahd1
Ggnbp1
Bak1
Olfr157
Irf5
Gca
Agtpbp1
Pidd1
Slc25a22
Zfp930
Ubxn8
Zfp57
Ppp2r5e
Dnmt3a
Zfp280b
Ddc
D230025D16Rik
Cox7a1
Fbln1
Slc12a7
Fez2
Cdh3
Taf6l
Mbd3
Zfp600
Gabbr1
Yars
S100pbp
Pyroxd1
Tpst1
Gipc2
Sirt3
Psmd13
Nudt4
Brox
Aida
Slc25a40
Dbf4
Fn1
Abcc5
Mdk
Tgm1
Il3ra
Smim38
Apobec2
Ttc25
Rap1gap
Cst3
Ttll6
Zfyve28
Cfap99
Agmat
Tspan9
Ccar1
Plcd1
Mrpl37
Cyb5rl
Mdm4
Col4a2
Col4a1
Ass1
Crmp1
Zmiz1
Foxn4
Rnf169
Spag9
Eif4ebp1
Megf11
Rusc2
Tapt1
Ppdpf
Rap1gap2
Ms4a14
Ubr7
Gon7
Gm20604
Cfl2
Slc12a4
Gpm6b
Tmem205
Ccdc159
Kifc3
Ldb1
Ccr4
Prx
Rnf19b
Cfap20dc
Map7
Ier2
Rcbtb1
Sugt1
Mmgt2
Lrrc75a
Ankrd28
Smndc1
Tmppe
Srrm1
Atp2a2
Zfp809
Rps6ka1
Rfwd3
Gfod1
Dpp9
Kdelr3
Cox17
Aven
Maats1
Cpsf4l
Rpe
Midn
Atp5d
Nr2f6
Rusc1
Hoxa4
Mfsd14a
Slx1b
Bola2
Tead4
Rreb1
S100a16
Pde6a
Slc22a21
Fbxo8
Cep44
Sipa1
Zic5
Sgk1
Dusp5
Agtrap
Rnd3
Tmem39a
Tmco2
Oas2
C77080
Zfp985
Gpr179
Tgds
Gpr180
Slc7a7
Rex2
B230307C23Rik
Stra8
Fxr1
Trim17
H3f4
Ptgir
Kpna1
Wdr25
Wars
Nhlh2
Dhcr24
Ttll13
Acmsd
Steap3
Zfr
Vsig10
Spdef
1810010H24Rik
Ttc39c
Ubc
Rgs11
Smc3
Fam32a
St6galnac6
Pycr2
Ercc4
Wwox
Grtp1
Lyrm1
Dcun1d3
Aanat
Slc25a38
Megf8
Taar1
Tmem184b
Cldn34d
Agrn
BC031181
Pdk1
Wfikkn1
Tfcp2l1
Eif2ak2
Rest
Chd9
8030462N17Rik
Cndp2
Cobl
Pbx2
Gpsm3
BC028528
Aph1a
Prr14
Myo10
Olfr806
Plcb3
Gpatch3
Rfc2
Ppp1r14b
Ablim2
Guf1
Masp2
Olfr915
Cox5b
Aurkc
Col6a6
Racgap1
Dppa5a
Best3
Hbegf
Resf1
Hectd1
Akirin2
H2ap
H2al3
Bcl2a1c
Epp13
Rita1
Ddx54
Phactr3
Yap1
Cep70
Ppcdc
Atox1
Slc25a51
Etnk2
Lims1
Rnf5
Agpat1
Otud5
Plpp2
Vmn1r1
Pcmtd1
Nr0b1
Slc25a36
Mrpl40
Hira
Ubap1
St3gal3
Rmnd5b
Zfp870
Gm20346
Zswim8
Agpat2
Chchd1
Pik3ip1
Stard6
4930503L19Rik
Zswim1
Spata25
Ncapd2
Mrpl51
Rara
Mobp
Aldoart2
Angel2
Tyrobp
Lman1
Fam120a
Capn3
Tigar
H2-Q8
H2-Q6
Ap1s1
Smyd4
Rpa1
Kat6b
Tab1
Etf1
Ilrun
Ptger1
Acp5
Fam160b1
Ap3b2
Tle6
Grm4
BC048679
Dpys
Atp5e
Ssty2
Gm21242
Zfp710
Chordc1
Timm8b
Sdhd
Ntng2
Atg4d
Spa17
Siae
Fbxo33
Snx29
Ndufa2
Ik
Fam205a1
Slc2a3
Peg12
Csrnp3
Kyat3
Eif1
Msmo1
Pou5f1
Ccnb1ip1
Sertad1
Insyn1
Pcyt2
Iars
Ccdc88b
Wnt8a
Pef1
Parvb
Dleu7
Ppp1r15b
Wdr26
H2-M5
Zrsr2
Sbk1
Lama5
C1qtnf9
Aldh1b1
Sec24c
Tafa4
Pla2g10
Mtrr
Fastkd3
Gna12
A930018P22Rik
Taf4
Sod1
Eml2
Pitpnc1
Cln8
Zfp438
Alpl
Tnfrsf13c
Steap2
Nupr1l
Trpm3
Gse1
Zdbf2
Cdsn
Tlr5
Krt222
Ino80c
Nkg7
Lim2
Vim
Homer3
Bcl3
Zadh2
Tshz1
Mup4
Rbpj
Ppl
Ttc24
Iqgap3
Kcnj1
Dohh
Smim24
Gm48552
Spc25
G6pc2
Cnpy1
Cited2
Usp45
Tstd3
Gm45915
Bcat1
Csnk1e
Rasl10b
Mybl2
Robo4
Tdgf1
Lrrc2
Fjx1
Dennd10
Cystm1
Tatdn2
Glis2
Kcnn1
Hmgxb4
Ugcg
Rnf213
Jmy
Dab2ip
Pld3
2310022A10Rik
Clcn5
Stk24
Fgf9
Ankrd39
Tvp23b
Atg10
Smarcd1
Pigv
Lekr1
Nt5e
Gabpa
Atp5j
Tmem19
Mcm2
Faah
Fxn
Frat1
Aebp2
Samm50
Slc25a19
Ap3s2
Lgals3
Ppif
Pdcl3
Trim56
Slc39a14
Rras
Rapgef3
D630039A03Rik
Usp9x
Camk1d
Esr1
Sgpl1
Rfc4
Prrt3
Cdc42bpg
Zbtb45
Sec1
Bhlhe40
Gpa33
Dusp27
Gm7244
Kremen1
Shisa5
Cmip
Sun1
Luzp1
Pdlim1
Cyp46a1
1700020D05Rik
Arvcf
Hspb7
Clcnkb
Pakap
Ciao2b
Impa1
Mrpl34
Abhd8
Vmn2r102
Knop1
Iqck
Trpm7
Erf
Usp28
H2-Q2
Atrx
Efcab2
Gmnn
Abhd6
Kmt2c
Ceacam16
Dcp2
Nfe2l1
Ppp1r10
Mrps18b
Pmf1
Mtfr2
Hsh2d
Etv5
Rhoq
Aym1
Colca2
Setd7
Tfr2
Vegfc
Kif21a
Ptov1
Cspg4b
Gm12169
Flcn
Prps1
Ckb
Mrpl45
Mpv17l2
Cyb5r4
Fgfr1
Ankdd1a
Pcgf2
Qrfpr
Pdgfrb
Stra6
Cux2
B3gnt7
Ccdc33
Atxn2
Cdk13
1700066B19Rik
Crtap
Rtn4rl1
Chpt1
Ankrd9
Trim29
Tmem170
Cryzl2
Ap1b1
Lrp10
Znrd2
Fam89b
Krtap5-5
Crygd
Rcc1l
Rhbg
Rasl11a
Elobl
Ilf2
H3c11
H2bc22
H2ac22
H1f5
Scyl1
Mgat4c
Chd1l
Cfap161
Stat4
Rpp25
Slc46a1
Spry4
Arih2
Cacnb3
1700019D03Rik
Nemf
Grid2ip
Calu
Tsc22d4
Asap3
Slc13a2
Atp11a
1700102P08Rik
Inip
Tmco6
Cd14
Nr5a2
Shf
Phip
Krtap31-2
Gja4
Zfp523
Ppp6r2
Kcnip3
Cfap206
Fam227b
Dtwd1
9530068E07Rik
Zfp961
Nr1d2
G0s2
Drosha
6030458C11Rik
Foxa1
Washc1
Rps29
Ppp1ccb
Nyap1
Ppp1cc
Gstm3
Sema4b
Nfam1
Naca
Krcc1
Tcf15
Fermt2
Tspan10
Nploc4
Cldn14
Pim1
Sumo1
Gdpd1
Vmn1r207
Sall4
Ankrd45
Eif4ebp2
Cemip2
Timeless
Mip
Kdm5b
Otp
Etl4
Zfp319
Usb1
Rcor1
Wdsub1
Tssk5
Hgh1
Amacr
Wdr82
Pim3
Ryr1
Hexb
Gm14393
Trappc2l
Galns
Skil
Triml2
Prps2
Mlana
Lrrc10b
Ppib
Ly6g6e
Ly6g6d
U2af1
Akap1
Xirp1
Hhip
Stxbp1
Ly6g6c
Cilp2
Aadacl2fm1
Pbk
Il6st
C2cd2l
Dpagt1
Src
Kbtbd7
Fignl1
Grk3
E2f2
Atp2a3
Adap1
Tmem60
Phtf2
Themis2
Lrrc25
Krt79
Bmp1
Capza2
Mrpl4
Smad6
Rbp1
Gng8
Malt1
Gch1
Slc25a13
Ccdc38
Amdhd1
AI987944
BC052040
Ppp1r9b
Haus1
Atp5a1
Polr3gl
Ankrd34a
Axin1
Lefty1
Csf2ra
Map1b
Arl14epl
Rsph4a
Amt
Zmym2
Scg5
Ndc1
Shld1
Slc14a2
Slc6a1
Dhx9
Csde1
Pafah2
Mfsd3
Gpt
Anxa5
1810062G17Rik
Naa80
Hyal1
Tnfsf13
Senp3
Anpep
Bckdhb
Trem2
Lrfn1
Vangl1
Gpr4
Erdr1
Ndufs8
Nt5dc3
Ccdc60
Tubg1
Retreg3
Ypel2
Mast3
Mrps15
Pip4k2b
Tor3a
Nanos3
Gnl3l
Tecr
Mbnl2
Tln1
Creb3
Nop9
Dhrs1
Meis2