ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX118692 | mESC derived neural cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX3301664: Embryonic limb

◢ SRX3301665: Embryonic limb

◢ SRX018669: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◣ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Tcstv3
Adgra2
Cldn34d
Hivep3
Tmem181a
Adgre5
Notch4
Fubp3
Socs3
Cdx1
Xylb
Brox
Aida
Tomm5
Mafa
Mkrn1
Slc6a16
Cd37
Oxnad1
Dph3
Tcp11
Mreg
Ints3
Gpx4
Ect2
Ncmap
Hoxb13
Zdhhc18
Cidea
Aqp3
Itga5
Slc43a1
Olfr806
Brwd1
Abhd6
Gabarapl2
Kcnk5
Mobp
Wwox
Nphs1
Pmepa1
Tm7sf3
Fbxo6
Ksr1
Hrob
Cdk15
Gstp2
Baz1b
Thrsp
Ifitm7
Bmerb1
Nkg7
Lim2
Capns1
Tmem63c
Slc7a15
Icam1
Pidd1
Slc25a22
Cic
Rusc1
Spc25
G6pc2
Prdm14
Dcaf4
Bcar1
Vmn2r102
Sec31b
Grtp1
Gtpbp4
Hoxa1
Enpp4
Ttpal
Mtg2
Rarg
Ube2o
Gpcpd1
Calr
Kpna1
Aadacl2fm1
Zfp532
Cyp26a1
Slc15a1
Dppa2
Mis18bp1
Mmgt2
Lrrc75a
Efnb3
Tmem191c
Nodal
Tle5
Abl1
Kazn
Insyn1
Pdgfrb
Agrp
Psmb7
Atp2a2
S1pr2
Mtf2
Brsk1
Impa1
Oasl1
Megf8
Abr
Ppp3ca
Ttll3
Zfyve28
Cfap99
Ankrd44
Rbks
Babam2
Plekhb1
Spred2
Tmco2
Kat7
Mok
Mib2
Ccdc80
Galnt2
Slc4a1
Rreb1
Esr1
Dusp9
H2-Bl
Nme1
Hbegf
Gm973
Plxdc1
Letmd1
Trim7
Zfp827
Serpinf2
Pik3ip1
Trmt1
Resf1
Krt79
Ino80c
Ryr1
H2ap
H2al3
Prmt8
Kank3
Dedd
Pbld2
Hnrnph3
Hspb8
Rhox11
Camk1
Atg14
Pspn
Alkbh7
Usp28
Evi5
Csf2ra
Crtap
Megf11
Tctn1
Pdlim1
Col9a2
Znrf1
Il3ra
Tyrobp
Gm7244
Acp6
Bmt2
Fam131c
Smim38
Fxn
Gm867
Chchd10
Vars
D17H6S56E-5
Nek2
Rusc2
Drd4
Znfx1
Ppdpf
Sec22c
Capn3
Phc1
Ankrd45
Prdx6
Atp11b
C1qa
Capza2
Itpk1
Cpt1a
Rnf19b
Amacr
Acp5
Ago2
Ankrd28
Fam160b1
Bcl2a1d
Nudt4
Ccdc102a
Adgrg5
Slc22a21
Trim17
H3f4
Tnnt1
Ilrun
Ppp1r15b
Epp13
Tmem116
Erp29
Msh6
Gipc1
Best3
Aebp2
Zfp316
Cfl2
Nsd1
Phf5a
Aco2
Rxrb
Col11a2
1810020O05Rik
Zfp438
Zyg11a
4921517D22Rik
Nupr1l
Dpp4
Rnf13
Pyroxd1
Misp3
Men1
Eras
Mllt6
Lipe
Stk35
1810010H24Rik
Vwa8
Rfc5
Slc29a1
Mymx
Ghdc
Sgk1
Ank1
Septin4
Cdsn
Gabbr1
Trim56
Dag1
Hspb7
Clcnkb
Pla2g10
Rnf213
Agpat3
Dock6
Scyl1
Fam166c
Tmem64
Nfyb
Jarid2
Gpr20
Agpat2
Irf5
Kcnk4
Tmem184b
Crlf2
Fbxo46
Bhmg1
Zfp523
Erich3
Shisa5
Ggt6
Il31ra
Rfx2
Colca2
Hoxc4
Rasl10b
Gipc2
Bcl2a1a
Lman1
St6galnac6
Muc1
Arhgap19
Bcl11b
Zfp143
Cfap161
Map1b
Slc25a36
Fam171b
Slc14a2
Ssc4d
Smarca5
Ubxn2a
Sema4g
Rnf125
Gm3558
Usp45
Dcp2
Ctsd
Tstd3
Vmn2r22
Kng2
Rnf169
Wsb2
Fkbp14
Ttc24
Iqgap3
Eif4e1b
Dlgap3
Spata33
Chmp1a
Gca
Sin3a
Gabpa
Atp5j
Spint4
Slc25a13
Ptgir
Slc12a7
Sycp3
H2-Q8
H2-Q6
Trpv3
Tent5c
Arf4
Arfgef2
Aanat
Crybb1
Cryba4
Adora2a
Sbno2
Ptpmt1
Cacng6
Rgl2
Bcl2a1b
Uqcrc1
Stat4
Prss52
Rarb
Pitpnc1
Abcg4
Stra8
Slx1b
Bola2
Abcc5
Gm45915
Uck1
Ckb
Krcc1
Ncapd2
Mrpl51
Smyd4
Rpa1
Foxp1
Taf13
Mrs2
Arih2
Foxa1
Ankrd39
Pbx2
Gpsm3
Extl1
Pcmtd1
Adnp
Lrmp
Tmem60
Phtf2
Ggact
Tafa4
Zfp710
Rnaseh1
Lyg2
Zswim1
Osbpl1a
Spata25
Tfrc
Tmem205
Ccdc159
Uba3
Arl6ip5
Ceacam16
Fbxo17
Spire2
Zfp979
Sirt3
Psmd13
Pdcl3
Zfp600
Etnk2
Hck
Creld1
Nr6a1
H2-Q9
H2-Q7
Slc28a1
Fbxo15
Trim26
Tsc22d4
Gpa33
Dusp27
Tspan9
Zfp985
Tdgf1
Lrrc2
P2rx1
Gm20939
Zdbf2
Lgals2
Rita1
Ddx54
Mrpl37
Cyb5rl
Ptcd3
Polr1a
Gcnt2
Shld1
Tmeff1
Sub1
Dennd10
Jmy
Heyl
Myo1b
Nat8f2
Slamf8
Ammecr1l
D830030K20Rik
Tefm
Itpr1
Dhx32
Jam2
Ap3s2
Tmem135
Slc25a51
Ado
Pcnt
Agtrap
Smim20
Phrf1
Erf
Zfp280b
Rara
Cystm1
Phldb3
Chd9
Rpgrip1
Cyb5r4
Sall2
Adamts15
Zfp980
Ppp2r5e
Dhcr24
Gm3696
Ndufs8
Nup205
Ltn1
U2surp
Spag9
B230307C23Rik
Trem2
Atp5e
Cln8
Abhd17c
Asmt
Fzd5
Ppm1b
Bik
Phf11d
Map7
Actn4
Alpl
Dnase2b
BC031181
Rpl17
Srrm1
Gm12169
Mbd6
Ddit3
Sema4d
Ifna13
Hps5
Gtf2h1
Smim40
Tomm40
Chpt1
Sema5b
Bcan
Lrrk2
I830077J02Rik
Taf4
Mbd3
Dppa5a
Hpse
Yap1
Tln1
Creb3
Upp1
Pgbd5
Slc38a4
Guf1
Ccdc88b
Disc1
Ldc1
Crybg2
Spp1
Cldn14
Sspn
Ier2
Rbpj
Glis2
Siah3
Tmem79
Smg5
Sstr3
Rbp7
Ttc25
Apobec2
Porcn
Fam32a
Cfap20dc
Ndufa2
Ik
Hmgcl
Tbcel
Acmsd
Ptch2
Plet1
Golga7b
Aldoart2
Tcf19
Cchcr1
Rai1
Ubap1
St6gal1
Pld3
2310022A10Rik
Smarcd1
Pde6a
Mcrs1
Tmem235
Kifc3
Eif4ebp2
Tfr2
Foxn4
Ppp2r2d
Mapk1ip1
Prrt3
Zfp819
Gipc3
Cox17
Maats1
Timp3
BC028528
Aph1a
Bmp1
Gdf1
Cers1
Ush1g
Otop2
Homer3
Meiob
Spaca6
Mdfi
Plk3
Prr5
Lyrm1
Dcun1d3
Srcap
Tnfrsf19
Fam25c
Fam81a
Sik3
Pafah1b2
Agrn
Ttk
Elf1
Sugt1
Ggnbp1
Bak1
Lama3
2310009B15Rik
Folr1
Nr1h5
Tecr
Dnmt3a
Mlst8
Zfp605
Gtpbp6
Timm8b
Sdhd
Myl4
Cdc27
Pigr
Rex2
Nfatc2ip
Tead4
Eva1a
Sgf29
Ccdc113
Dab2ip
Fignl1
Pacsin2
Skil
Kat6b
Stub1
Rhbdl1
Jmjd8
St6galnac2
Gm29825
Tvp23b
Mgat3
Def6
Adam19
As3mt
Trib3
Hrh2
Nfe2
Pbk
Smpd4
Stard6
4930503L19Rik
Mxd4
Fam205a1
Smarcc2
Gyg
Ppp5c
Rgs5
Ppfibp2
Hsh2d
Sall4
Aurkc
Rap1gap
Sntb2
Aven
Lgals9
Rmnd5b
Rnf130
BC052040
H3c3
H2bc3
H1f2
Haus1
Atp5a1
Phactr3
Cpsf4l
Zswim8
Chchd1
Tmem39a
8030462N17Rik
Zfp526
Dedd2
Cobl
Kcnip3
Smc3
Cdc42bpg
Ppp1ccb
Tlcd1
Gja1
Nek8
Lrfn1
BC048403
Cited2
Nanog
Wiz
Map3k12
Bcl2l2
Sec1
Ppp1r3e
Gch1
Plcb3
Ogdh
Eva1b
Mybl2
Ppp1r14b
Tsc22d1
Cog6
Cryzl2
Brap
Acad10
Rap1gap2
Baz1a
Ap5s1
A930018P22Rik
Scg5
Tmem200b
Ebf4
Asb11
Gna12
Myh14
Tmprss6
Wnt8a
Accsl
Hpse2
Dchs1
Twf2
Gfod1
Bahcc1
N4bp1
Slc7a7
Nudt1
Cacnb3
Tmem171
Sdha
Ccdc127
Hexb
Stag3
Gpc2
Tlr5
Cemip2
Zfp770
Dok4
Mdm4
Snx29
Mdk
Rhot1
Smg7
Dnaaf3
Mybph
Npm3
Agap1
Fgf8
Zfp407
Spatc1
Gm9508
Hagh
Fahd1
Zc3h3
Shh
Ctr9
Tnfrsf13c
Car3
Eno1
Pdk1
Rap1b
Mfsd12
Hmg20b
Atg4d
Slc25a39
Fam120a
Fgf4
Smad6
Arhgap27
Spa17
Siae
Gde1
Nedd4
Ice2
Osbp2
B3glct
Coro1b
Ptprcap
Pou5f1
Rab20
Etfa
Tuft1
Rprd1a
Tbx4
Lekr1
Rab8a
Spry2
Gse1
Gemin7
Fam169a
Arhgef26
Wdr82
Tmem259
Cnn2
Rcc1l
Nptx2
Pbp2
Olfr1044
Ndufaf6
Dhx35
Hnrnpab
Smim24
Gm48552
Tmem127
Ciao1
Utp18
Mbtd1
Phc2
Eif4ebp1
Dhrs3
Fbln1
Vmn1r83
H4c8
H2ac10
Eapp
Tex14
Fbxw7
Akirin2
H4c3
H1f6
Gcgr
Tmem125
Tmem33
Fam227b
Dtwd1
H3c7
H4c2
Trim29
Hmox2
Nemf
H3c6
Ssty2
Gm21242
H4c4
H2bc6
Rps29
H3c2
H3f3b
Rdm1
Rasip1
BC107364
Srsf7
Ilf2
Slc35g3
Polr2a
Izumo1
H2bc9
Olfr180
H4c1
Mycn
Ier5
Cd44
H3c8
Erdr1
H3c11
H2bc22
H2ac22
H1f5
Vgll2
Adam5
P4ha3
H3c15
H3c14
H2ac19
H2ac18
Dchs2
H4c11
Klf2
H4bc24
H2bc23
H2ac24
H2ac23
Cyth4
H4c18
Poldip3
Ing1
Jund
Iqcn
H4f16
H2aj
Fam24b
Taf12
H2ac4
Malt1
Hspa5
Mettl14
Crebzf
Prkdc
Rhobtb1
A930033H14Rik
H4c9
H2bc11
H2ac11
Nabp1
Srsf3
Gm20594
H3c13
H2bc18
H2bc21
H2ac21
H2ac20
H3c1
H1f1
H2bc4
H2ac6
Dlg4
H2ax
Gja4
Ccin
H4c17
H2bc12
H2ac12
Foxo3
Klf4
Rgs18
H4c6
Gtf2a1
H1f4
Arrdc2
Rsrp1
H3c10
H2bc14
H2bc13
H2ac13
Btg2
Mphosph9
2810006K23Rik
Ubb
Sumo1
C1qbp
Asph
Hspa8
Scn8a
Rrn3
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Zbtb37
H4c12
H2bc15
H2ac15
Fam53c
Tmigd1
Ttf1
Tob1
Arid5a
Sfi1
Gm3448
Gm3417
Ints6
Stap2
Mpnd
Pcx
Junb
Taar7a
Tcte3
Gm3435
Ranbp3l
Tpm2
Dcpp1
Hexim1
Rab7
Rpl3
Calm2
Sde2
Nufip2
Rnd3
Creb3l3
9030025P20Rik
Mybpc3
Lrch4
Fbxo24
Utp14b
Acsl3
Mpp7
Dpysl3
Nop58
Hsp90aa1
Stk3
Srsf5
Insig1
Rnaset2b
Csrnp2
Sumf1
Trpm1
Fut8
Ppp1r10
Mrps18b
Slc9a1
Gm648
Dnajb9
Tro
Rnaset2a
Npbwr1
Gtf2a1l
4921539E11Rik
Klf6
Zfp36l1
Dgat2
Arl15
Ddit4
Calm1
Eif2s3y
H4c14
Rbm14
Gm21992
Gtf2b
Gpx1
Sacm1l
Hsp90ab1
Ctsl
Fbxo31
Cbr3
D230025D16Rik
Fus
H2-DMa
Brd2
Adck5
Tbc1d10b
Mylpf
Raf1
Atp1a1
Cbx4
Olfr646
Pnp
Aplp2
Gadd45a
H1f3
Actb
Rnf103