ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX208062 | ES cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX3301664: Embryonic limb

◢ SRX3301665: Embryonic limb

◢ SRX018669: ES cells

◢ SRX208055: ES cells

◣ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Tcstv3
Eapp
Tex14
H3c6
H3c7
H2bc9
BC107364
H3c3
H2bc3
H4c2
H3c2
H2ac4
H2bc12
H2ac12
H4c11
H4c3
H1f6
H3c10
H2bc14
H2bc13
H2ac13
H3c11
H2bc22
H2ac22
H1f5
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
H3f3b
H2bc4
H2ac6
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
H4c8
H2ac10
H3c8
Gm3448
Gm3417
Tcte3
Gm3435
Slc35g3
Polr2a
H4c12
H2bc15
H2ac15
H4c9
H2bc11
H2ac11
H4c1
H3c1
H1f1
H4c4
H2bc6
H3c13
H2bc18
H2bc1
H2ac1
Rdm1
Olfr806
9030025P20Rik
Sspn
Abhd6
H2bc21
H2ac21
H2ac20
H4c17
Taf12
Ermard
H1f4
Poldip3
H4c6
H1f3
Sfi1
H2ax
H1f2
Gtf2a1
Srsf7
Taf4
Zbtb37
H4f16
H2aj
Ubb
H3c15
H3c14
H2ac19
H2ac18
Ptpn6
Grcc10
Mpp7
Gtf3c6
Tob1
Errfi1
Sirt4
Atp1b2
Ing1
Srsf2
Mfsd11
Hnrnpab
Ints6
Rsrp1
Mphosph9
2810006K23Rik
Rps12
Aadacl2fm1
Fam53c
Il31ra
Calr
Eif4a1
Slc9a1
Jpt1
Npm1
Gtf2f1
Jund
Iqcn
Brox
Aida
Tmem107
Arrdc2
Smc3
Tmprss11d
Csrnp2
H4c14
Pnp
Eif4g2
BC005537
Wwox
Tex19.1
Klf6
Cdk12
Nabp1
Gfpt2
Rpl27
Rcl1
Kpna1
Sgf29
Rack1
Ifrd1
Ccdc110
Rpl3
Smarca5
Dhx9
Ccn2
Rpl15
Nkiras1
Magee2
Urgcp
Hexim1
Nufip2
Ftl1
Hspa5
Srsf3
Epha4
Psg26
Hsp90ab1
Ier2
Ier5l
Insig1
Pik3r3
Slc25a4
Sf3b1
Wsb1
Pcna
Ddx5
Cep95
Trpm3
Tfrc
Sde2
Plscr4
Mcl1
Dchs2
Gm10710
Zfp119b
Matr3
Arid5a
Shoc2
Bbip1
Smurf2
Gadd45a
Mbtps1
Dhx8
Sqstm1
Rpl6
Rpl13
Lsm14a
Tti2
Nbeal2
Ccdc12
Dnajb9
Arl4d
Rpl23
Zc3h10
Rpl41
Sub1
Btg2
Gls
Mrpl39
Oog1
Gm2042
Taf4b
Nasp
Spg11
Kansl2
Utp14b
Acsl3
Pate7
Mat2a
Naca
Snrpg
Hnrnph1
Snrpb
Zfp119a
Tmpo
Hoxb13
Nme1
Pafah1b1
Caprin2
Pkm
Hspa8
Nop58
Cdc5l
Cldn34c4
Taf13
Erdr1
Taar7a
Ddit4
Taar6
Peli1
Cbx8
Crebzf
Pole4
Snf8
Hsp90aa1
Rps24
Polr3a
Ptpa
Crat
Pabpc1
Txn1
H2aw
Kpna2
Farsa
Hsd3b5
Fus
Marchf3
Rpl9
Lias
Lman1
Srsf1
Eef1e1
H2bu2
Pdhx
Apip
Unk
Ppia
Dynll1
Gm3667
Gtf2b
Rpl26
Uhrf1bp1l
Med6
Gm13057
Gm13040
H2-DMa
Brd2
Mknk2
Tsc22d1
Pbk
Styxl1
Mdh2
Fyco1
Hmgb2
Znfx1
Nxf1
Zfp959
Rps2
Rnf151
Ndufb10
Arc
Tmem270
Mre11a
Ankrd49
Mest
Arl6ip1
Sod1
Rnf149
Kat6a
Srrm2
Ksr1
Hjurp
A730008H23Rik
Zfp943
Zfp942
Ap1g1
Amd2
Amd1
Por
Clcn4
Aqp8
Spin2d
Dusp1
Fam174c
Cirbp
Nfat5
Selenot
Thoc1
Rtcb
Cabp2
Tcea1
Fam98b
Rps27a
Clhc1
Hpf1
Clec11a
Ncl
Dnajb14
H2az1
Rita1
Ddx54
Maml1
Ctnnb1
Impdh2
Ppil4
Rtn4
Zwilch
Rpl4
B4galt3
Pigg
Btg1
Psme4
Ints5
Lbhd1
1810009A15Rik
Rps15a
Atp1a1
Wiz
Rps20
Upf3a
Asmt
Mterf1b
Drg1
Srsf5
Prdx1
Olfr1154
Rps26
Snx18
Tubb4b
Slc36a1
Tial1
Rps6
Dlg3
Shroom4
Zfp36l1
Hnrnpa2b1
Cbx3
Zfand5
Ppp1r15a
Plekha4
Mak16
Fntb
Rpl7a
Med22
G3bp1
Kcnh1
Ier5
Gapdh
Elp5
Ctdnep1
Sertad2
Kifap3
Dars
Srp54c
Srp54b
Vcpkmt
Rps8
Dhx30
Sephs2
Dgat1
Klf2
Cited2
Clu
Rhob
Ulk2
Ahctf1
Mtpap
Traf7
Arrdc3
Eef2
Calm1
Pts
Cop1
Tmub1
Fastk
Cabyr
Canx
Sost
Tbrg1
Gpx1
Tmem79
Smg5
Rcn2
Tuba1c
Ppp1r8
Ubac2
Acly
Ube2s
Cyp17a1
Ppcdc
Zfp619
Cdh1
Timm22
Appl1
Cep295
Ankfy1
Rfc3
Fut8
Slc2a1
Prss35
Scfd1
Aqr
Snx5
Mgme1
Ccnt1
4930415O20Rik
Pou5f1
Stmn1
Rpl35a
Iqcg
Agpat2
Cltc
Olfr362
Calm2
Rbbp7
Tnrc6c
Ncoa4
Pex3
Adat2
Ptcd3
Polr1a
Tma16
Nudt1
Scnn1g
Bclaf1
Pradc1
Cct7
Yeats4
Mrm2
Oxnad1
Dph3
Cep43
Setd5
Sfpq
Rpl19
Cacnb1
Hspa9
Srp68
Olfr773
Slc25a3
Srp19
Sf3b5
Ppan
Klf7
Rps3
Nprl3
Ccnq
Ly6d
Olfr142
Zfp981
Zfp991
Lyzl6
Rnf19b
Mylip
Ptma
Hif1an
Rps3a1
Srcap
Spata20
Olfr1495
Ttc12
Ppp1r10
Mrps18b
Adpgk
Taf1d
4931406C07Rik
Rab33b
Mrs2
Crlf3
Itpa
Ddrgk1
Psma4
AY074887
Esr1
Rnaset2b
Rnaset2a
Mttp
Atp6v0a1
Rrp15
Psmd5
Cutal
Atf2
Trmt10a
Rnf7
Olfr38
Olfr1388
Mtf2
Glul
Tra2b
Fxn
Ubr3
Tkfc
Ddb1
Rapgef6
Tsg101
Mrpl35
Rbm39
Ptpn2
Polg2
Map3k3
Dus4l
Cog5
Jade1
Pdia3
Catsper2
Rpl12
Lrsam1
Recql4
Lrrc14
Ddx52
Rccd1
1600014C23Rik
Kdm4d
Cwc15
Nemf
Trp53inp1
Zfp963
Rps7
Sphk2
Rpl18
Fam83e
Add3
Prpsap2
Psme3
Crls1
Actb
Tcta
Rhoa
Opa1
Dnajb1
Tdp2
Acot13
Rnps1
Tmem80
Deaf1
Smim7
Ptrhd1
Cenpo
Cftr
Cbr3
Cdkn2aip
Atf6
Bdh2
Adss
Zfp433
Gm32687
Kansl1
Bcl11b
Hnrnpc
Gm10406
Mybpc3
Arl15
Snrpe
Rpl8
Commd5
Rplp0
Mapk1
Arl4c
Tm2d1
Ccdc86
Rspo3
Mterf1a
Med21
Usp53
Rps19
Zfp207
Ints12
Gstcd
Dynlt1b
Strap
Zfp143
Skp1
Eif3a
Guk1
Ccnyl1
Wdr82
Cpsf1
Hectd4
Ythdc1
Ephb3
Sac3d1
Gk5
Nek2
Haus1
Atp5a1
Fos
Uspl1
Napepld
Dip2b
Etfrf1
Casc1
Taok1
Nphp1
Mtln
Eif5a
Tent5c
Rps9
Kctd5
Rpl17
Paxip1
Vps52
Rps18
B3galt4
Paip2
Tcf15
Ahcyl1
Kat8
Nubp1
Blmh
Gm29317
Gm28093
Gm21810
Gm21745
Rnf34
Gm28459
Gm21843
Gm21805
AU041133
Gm21918
Gm21908
Gm21753
Gm21751
Gm21724
Aldh3a2
Carmil1
Hmga1b
Hmga1
Acer2
Zswim3
Acot8
Ppm1b
Zfp866
Haus4
Lipo3
Sptbn1
Slfn14
Nmt1
Ccna2
Nup62
Il4i1b
Atf5
Slc38a2
Pmf1
Edrf1
Timm17a
Myh10
Rab8a
Spc25
G6pc2
Fasn
Etf1
Zcchc17
Snrnp40
Slc5a5
Rpl18a
Ptpru
Rbm34
Ergic2
Cfl1
Olfr215
Uchl1
Eef1g
Trappc1
Kcnab3
Cntrob
Zscan21
Dnaja1
Pcif1
Gadd45b
Serbp1
Dbnl
Rpl31
Rptor
Slc25a39
Rsrc2
Kntc1
Slc18a1
Atp6v1b2
Zfp654
Cggbp1
Fbxw2
Rps4x
4931414P19Rik
Smc5
Sp2
Mdh1b
Fastkd2
Ska3
Mrpl57
Fancd2
Emc3
Odc1
Fnbp1
Atp1b1
Ube2m
Chmp2a
Atp6v0c
Mmaa
Ttc17
Mrpl17
Amdhd2
Zfp97
Iba57
Pigq
Nhlrc4
Mettl14
Plxdc1
Tagap1
Foxc2
Polr3gl
Ankrd34a
Clcn3
5730455P16Rik
Cdc42se2
Cct4
Copb2
Rnasel
N6amt1
Smndc1
Set
Pfdn2
Nit1
Prr14l
Slbp
Rab13
Rps27rt
Rbm25
Ubap2l
4933434E20Rik
Coq3
Uqcrb
Gm10767
Atxn2l
Cops3
Kat7
Eef1a1
Mrps28
Pgrmc1
Ren2
Ren1
Chmp5
Bag1
Bbs10
Kifc5b
Rab7
Aplp2
Sertad1
Cpm
Ddx3x
Actg1
Tnrc6b
Prdm10
Rad23a
Ogfod1
Nudt21
Zfp330
Gosr2
Slc4a11
Irgm1
Pir
Gtf2a2
Txnip
Kifc3
Csde1
Tra2a
Snrnp70
Mlh1
Epm2aip1
Ipo7
Wdhd1
Socs4
Ndufb1
Cpsf2
Olfr294
Rif1
Col1a1
Ckap2
Gpx4
Zc3h13
Ubl7
Sdad1
Mtif2
Id1
Cct5
Atpsckmt
Rbis
Zfp955b
Ints10
Smyd4
Rpa1
Slc6a4
Tasor
Pelp1
Slirp
Nrp
Alkbh1
Tbpl1
Gm3005
Srsf11
Lrrc40
Arl2bp
Ppp1r3c
Cks2
Mrpl30
Mitd1
Ccng1
Kdm3a
Nsun4
Arhgef7
Mad2l1
Vps4a
Zfp882
Rnd3
Fah
Pcnp
Pcnt
Uqcrq
Gdf9
Kctd20
Rc3h2
Micos10
Zfp868
Rpl36
Micos13
Atad2
Rpl39
Nqo1
Ankrd39
Ankrd11
Kmt5b
Glce
Esyt2
Txnrd1
Exd1
Chp1
Megf9
Luc7l
Map3k7
Birc6
Fmr1
B230219D22Rik
Rnaseh1
Rpl30
Dcaf12
Bcl9l
Kbtbd8
Dcp1b
Cep55
Nfyb
Dmxl1
Sirt1
Cdkn1a
Atp5e
Gbe1
Eloc
Rps23
Rft1
Polr3d
Xpc
Lsm3
Selenof
Hs2st1
Zfp638
Ints13
Fgfr1op2
Ppih
Ccni
2010109A12Rik
Exosc6
Rchy1
Nifk
Zfp512
Smn1
Ccm2
Spata31d1d
Cdk1
Arf3
Sae1
Rnf150
Ifna13
Rbm14
Gm21992
Hspa1l
Hspa1a
Atp5b
Spg7
Srek1
Ddx17
Rad1
Brix1
Gtf2h3
Eif2b1
Trak2
Ercc6l2
Ccnb1
Micalcl
Akip1
Hddc2
Dnajc19
Sugp1
Mau2
Wnk1
Nat10
Ssr3
Sugct
Mplkip
Tgfbrap1
AI597479
Tmx3
Rbm3
Oxa1l
Kit
Raf1
Jun
Plk2
Serinc3
Slc7a5
Clk1
Trir
Get3
Tmco1
Ywhae
2010315B03Rik
Tm2d3
Zdhhc7
Ccdc88a
Slc49a4
Actn4
Mrpl1
Mtr
Tgoln2
Tgoln1
Tmem126a
Tubd1
Rps6kb1
Map11
Snu13
Ube2a
Ngdn
Rsbn1
Tbcd
Tars2
Slc25a45
Frmd8
Gata3
Chic2
BC031181
Angel2
Denr
Rad51d
Fndc8
Ptpn12
Cfap97
Pnn
Atp9b
Wac
Adgrf1
Fscn1
2610507B11Rik
Gpbp1
Nelfcd
Utp23
Zfp160
Rab17
Pole2
Rab5b
Morc3
Zzz3
Stxbp4
Cox11
Mapk1ip1l
Nudt2
Kif24
Nsrp1
Ctbs
Dpy19l4
Eci1
Zfp655