ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX520462 | F9
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX3301664: Embryonic limb

◢ SRX3301665: Embryonic limb

◢ SRX018669: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◣ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Trim29
Trib3
Ilf2
Mill1
Adam5
Gtf2a1l
Mettl14
Rps29
Stk3
Dcpp1
H4c8
AU018091
Sumf1
Slc38a5
Gria3
Eif2s3y
Katna1
Fxyd1
Etv3l
Musk
Defb8
Cbx4
Il1b
Gpm6a
Asb2
Pomgnt2
Lilr4b
H2-M5
Inmt
Naaa
Ostn
Gpr141
Tas2r134
Gm51598
Snorc
Avpr1a
Tpcn2
Slc44a3
Shank1
Fanci
Alox12b
Kcnn2
Pcx
Ifna6
Dytn
Cxcl5
Wipf2
Iigp1
Coro6
Zp1
Igfbp2
Cnga1
Cdh26
Olfr125
Cyp2d9
Depdc1a
Cyp2f2
Gcm2
Agbl5
Cxxc4
Ly6l
Ltbp1
Foxp2
Pabpc5
Lrrtm4
Pde4a
Klri1
Scgb2b3
Selenbp1
Cmas
Pak3
Chic1
Nkx2-5
Rpl37rt
Gas1
Cyren
Herc6
Retnla
Enpep
Ndp
Trim34a
C130073F10Rik
Zfp710
Olfr1200
Oasl1
Tgtp1
Cyp3a16
Echdc2
Dclk3
Ctnna3
Gm45337
Scgb2b2
Ces2a
Vmn1r205
Cngb3
Prss47
Lamp5
Acsm2
Scn8a
Syngap1
Gnb5
Npm2
Knl1
Mboat1
Fuom
9930111J21Rik2
9930111J21Rik1
Rftn2
Fmc1
Cped1
Exosc2
Fuca2
Lmo3
Olfr813
Krtap6-1
Pate4
Dysf
Trarg1
Oxgr1
Crebzf
Cd163l1
Vgll4
Rffl
0610010F05Rik
Olfm5
Shox2
Ikzf4
Zswim8
Fbxo31
Sacm1l
Prss51
Zic4
Olfr222
Nt5c1b
Ces1f
Nxf2
Abcc3
Meikin
Paqr5
Fam71f1
Sspn
Proca1
Mlxipl
Samd14
Gfpt2
R3hdm2
Stau2
Ppp6r3
Brk1
Lsm6
Ccdc85b
Alx4
Hs1bp3
Slx4ip
Rfx3
Zfp846
Fam126a
Fabp6
Irak3
Prickle2
Ucn3
Serpinb12
Alox5ap
Casp14
Sgk3
Kcnip1
Olfr1337
Myo1e
Sstr2
Stbd1
Mpp7
Mynn
Cdx1
Slc2a9
Frmd4b
Tfrc
En2
Trhr2
Ttk
Scgb2b1
Scaper
H2-Eb2
Pcdhb9
Cd22
Fam50b
Cd200r4
Enpp4
Pros1
Paip1
Strip1
Fubp3
Mknk1
Tm7sf3
Dpp9
Alkbh7
Ghdc
Emp2
Sema3g
Abcb7
Rarb
Snupn
Tdpoz3
Zfp385a
Olfr1286
Fabp9
1700021F07Rik
2200002J24Rik
Usp17la
4931406B18Rik
Zdhhc18
Pxn
Gpr132
Porcn
Kdm5a
Epgn
Slc43a1
Rbks
Babam2
Cog6
Fam32a
Dcpp3
Spp1
Usp17lb
Gpm6b
Oxnad1
Dph3
Tmem191c
Cox7a1
Arf4
Hhip
Phc1
Tcp11
Rnase4
Ang
Homer3
Atp5e
Gtpbp4
Lpar5
St3gal3
Jsrp1
Mkrn1
Kif2b
Eapp
Adgra2
Tex14
H4c3
Asmt
Plekhb1
Hivep3
Slc15a1
Tomm5
H3c6
Mtf2
H3f3b
Rdm1
Srsf7
Polr2a
H3c7
H2bc9
H4c4
Cdk15
H3c11
H3c15
H3c14
H4c11
Ing1
H4c18
H3c2
Hspa5
H4c9
H3c3
H2ac19
H2ac18
Gm20594
H3c13
H2bc18
H2bc21
H2ac21
H2ac20
H2bc4
H2ac6
H4f16
H2ax
Rhobtb1
Hnrnpab
Bmt2
Ttpal
H2bc12
H2ac12
H1f4
Arrdc2
Jund
Nabp1
Phf5a
Aco2
Rsrp1
H3c10
Btg2
Mphosph9
2810006K23Rik
H4c17
Ubb
H1f2
Hspa8
Taf4
H4c1
Calr
Zbtb37
H4c12
Fam53c
Icam1
Tob1
Arid5a
Dusp9
Taf13
Gm3448
Gm3417
Gtf2a1
Ints6
H3c4
Slc6a16
Tcte3
Gm3435
H4c2
Hexim1
Rpl3
Calm2
Ifitm7
Bmerb1
Ppdpf
Atp2a2
Sde2
Nufip2
Junb
9030025P20Rik
Utp14b
Acsl3
Sdha
Ccdc127
Sgk1
Hsp90aa1
H3c1
Srsf5
Insig1
Sntb2
Csrnp2
Haus1
Atp5a1
Ppp1r10
Mrps18b
Slc9a1
Dnajb9
Uck1
Poldip3
Pbld2
Klf6
H2bc6
Dgat2
Arl15
Acp6
Ddit4
Nek2
Calm1
H4c14
Rbm14
Gm21992
Gtf2b
Gpx1
Sub1
Ctsl
Ier2
Znfx1
Fus
Hrob
Mylpf
Raf1
Atp1a1
Pnp
Aplp2
Gadd45a
H2ac4
Cited2
Actb
Jpt1
Eif4g2
Rnf19b
Tsc22d1
Rnaset2b
BC005537
Clu
Mat2a
Sfi1
Tubb4b
H2bc22
H2ac22
Ermard
Smarca5
Prdx1
H2bc11
H2ac11
Errfi1
Rnaset2a
Cox17
Srsf2
Mfsd11
Sf3b1
Letmd1
Dag1
Eif4a1
H1f3
Smc3
Mknk2
Mib2
H3c8
Pcna
P4ha1
Hagh
Fahd1
Mcl1
Arl4d
Wsb1
Spata33
Hsp90ab1
Chmp1a
Dedd
Srsf3
Dhx8
Zfp36l1
Btg1
Amd2
Amd1
Hnrnpa2b1
Cbx3
Gtf2f1
H2bc13
H2ac13
Mrpl37
Cyb5rl
Amacr
Ndufa6
Arl6ip1
Trp53inp1
Atxn2
Gpcpd1
Rab8a
H2bc1
H2ac1
Slc38a2
Ftl1
Vegfa
Guf1
Ifrd1
Sephs2
H2ac10
H2bc8
H2ac8
Ier5
Spg11
Tuba4a
Lman1
Dmxl1
H4bc24
H2bc23
H2ac24
H2ac23
Marchf3
Ddx5
Cep95
Slbp
Rita1
Cfl2
Gtf3c6
Prdm14
Luzp1
Hjurp
A730008H23Rik
Zfand5
Zfp438
Dhx32
Cpt1a
Tnrc6c
Mbd3
Mymx
Sqstm1
Rhob
Pabpc1
Ppp1r3c
Dusp1
Fos
Skp1
Acly
Tob2
Klf7
Rcbtb1
Msh6
Vcl
Rnd3
Peli1
Slc25a39
H4c6
H2bc7
H2ac7
Dennd6a
Cep43
Wsb2
Slc25a3
Muc1
Dhcr24
Rps12
Gapdh
Ep400
Msmo1
Lipe
Dnaja1
Pigt
Ubc
Eef1a1
Eif4e1b
Hnrnph1
H2bc15
H2ac15
Mafb
Abr
Ccnyl1
Slc9a3r1
Maml1
Rps3
Epha2
Dppa2
Pyroxd1
Glul
Rps20
P4hb
Jun
Plk2
Styxl1
Mdh2
Clic4
Ncl
Pdia3
Mbtps1
Catsper2
Snrpe
Mterf1b
Herc2
Dhx9
Gtf2a2
Traf7
Sap18b
Sap18
Cebpa
H2bc14
Ctnnb1
Ppp1r2
Mterf1a
Kmt5b
Sirt3
Psmd13
Cirbp
Sirt1
Ubap1
Pdcl3
Ttc41
Tra2b
Hsp90b1
Impdh2
Trpm3
Ipmk
Mad2l1bp
Ndufs7
Dok4
Idi1
Ankrd28
Itpr1
Fasn
Chd9
Tcta
Rhoa
Ankrd11
Hhex
Frmd6
Uspl1
Mertk
Vamp1
Ppp1r15a
Plekha4
Kctd5
Smg5
Pcmtd1
Usp37
Ndufs8
Cnot9
Urgcp
Tsc22d2
Slc25a51
Ndel1
Slc25a30
Sesn2
Erf
Hmga1b
Hmga1
Napepld
Susd6
Map1lc3b
Gls
Wdr77
Atp5pb
H2bc3
Klf10
Rps6
Paxip1
Creld1
Ptpmt1
Por
Txnip
Pdhx
Apip
Fdx1
Klhl21
Dusp5
Dnajb1
Mrpl1
Acer2
Mrpl39
Caap1
Ncoa3
Erdr1
Clcn4
Gpx4
Dnajb4
Chchd2
Nfkbia
U2surp
Hspa1l
Hspa1a
Mylip
Grcc10
Ciao2b
Rsrc2
Kntc1
Cdkn2aip
Prmt8
Rnf103
Med23
Mpc1
Kdm4c
Socs3
Dgat1
Ccdc110
Fyco1
Acy3
Arhgap19
Man1a
Fth1
H2-Bl
Chordc1
Atp1b2
Sertad2
Rnf125
Tagap1
Serinc3
Rps2
Cd81
Rusc2
Rpl7a
Med22
Txn1
Rpl23
Zfp119b
Slc31a1
Fkbp15
Nudt4
Eif3a
D230025D16Rik
Taf1d
4931406C07Rik
Whamm
Rpl13
Ern1
Adpgk
Zswim3
Acot8
Uqcrc1
Actn4
Irs2
Hspa1b
Rcl1
Gadd45g
Degs1
Rplp0
Cebpd
Sertad1
Smyd4
Rpa1
Lrrc28
Mapkapk2
Ddx3x
Rps24
Nrd1
Gclc
Rps27rt
Rab13
Atp5g3
Ncoa4
Glce
Cpm
H3f3a
Ccnt1
Sgf29
Snx18
Mak16
Ppia
Nfe2l2
Eef2
Rpl9
Lias
Pcif1
Ulk2
Pdk1
Chchd1
Rps9
Rbbp6
Baiap2
Shld2
Glud1
Tti2
Rbm39
Zfp119a
Vmn2r4
Tnnt1
Actg1
Nr6a1
Mrps28
Arrdc3
Nsrp1
Map2k4
Scnn1g
Eif4e
Dip2b
Rara
Pik3r3
Mapk1
Pigl
Ncor1
Ankrd39
Klf2
Rcn2
Npm1
Hmox2
Gadd45b
Ndufaf3
Tuba1c
Rbm4b
Wdr82
Zfp959
Midn
Plec
Fam25c
Slc5a3
Mrps6
Commd1
Adk
Abcb8
Vps52
Rps18
Tmem39a
Naca
Bbs2
Trappc3
Sod1
Rpl17
Ost4
Map2k2
Ddx24
Ccar1
Zfp963
Slc16a10
Rtn3
Rab33b
Csrnp1
Nfe2l1
Slc20a1
Rpl8
Etfrf1
Casc1
Plk3
Mapk14
Jak1
Nfkbiz
Ctdp1
Unc5b
H2-Q8
H2-Q6
Ggcx
Epc1
Eif1
Slc2a1
Nme1
Cxcr3
Tango2
Ksr1
Cfap20dc
Ttc7
Rnf38
Smurf2
Ppib
Med21
Taf4b
Cpsf1
Rnd1
Mob1b
Dnajc1
B2m
Paip2
Ssbp1
Id3
Hint1
Bsg
Gpat4
Pfn1
Setd5
Rhou
Spry4
Edrf1
Cat
B4galt3
2410002F23Rik
Lgr4
Irf8
Pcf11
Slx1b
Atp5j
Kcnk5
Sgpl1
Tiparp
Pgrmc1
Net1
Fxr2
Taco1
Herpud1
Top1
Srp19
Bclaf1
Acer3
Lsm14a
Ubr3
Rpl15
Nkiras1
Usp53
Rapgef6
Psme4
Phf11d
Ctbs
Stra8
Snrpg
Sugt1
Ptma
Fbxo8
Cep44
Atp5b
Ywhag
Knop1
Iqck
Fam43a
Acad12
Hs3st3b1
Mtr
Kbtbd7
Esyt2
Ints14
Ell2
Ndufa2
Ik
Wdr25
Wars
H2aw
Zfp770
Rpl41
Plpp1
Pikfyve
Idh1
Tgoln2
Tgoln1
Nop58
Flnb
Mllt6
Atg4d
Odc1
Nt5dc3
Rpl10a
Alg1
Rab5b
Ints8
Crot
Ptpa
Crat
Rnf149
Manf
H2az1
Rab43
Kansl2
G3bp1
Nfyb
Mtfr1
Gabbr1
Becn1
Sec22b
Mdk
Selenok
Irak2
Dynll1
Tab1
Rasl10b
Fra10ac1
Ddit3
Sfpq
Endog
Bcl2l1
Trmt2a
Ranbp1
Ptp4a1
Ahcy
Tspan9
Crybg2
Ulk1
Arc
Sorbs1
Gpi1
Sp1
Slc35d1
Tpi1
Lrrc8a
Rps28
Ndufa7
Pih1d1
Dennd10
Aldh16a1
Eprs
Cebpb
Zfp930
Snx29
Rbp4
Neu1
Atl2
Tpcn1
Rhot1
Rack1
Mrpl45
Iqcd
Slc18a1
Atp6v1b2
Id2
Rbpj
Cltc
Stat2
H2-K1
Ddx20
Atp6v0a1
Mpv17l2
Gorasp2
Hspb8
Cnbp
Trf
Mrpl44
Usp42
Nr3c2
Ddost
Daam1
Srsf6
Matr3
Akap8l
Tmem175
Gak
Sptan1
Nasp
Hif1an
Dbi
Cyb5r4
3110009E18Rik
Ugdh
Slc36a1
Hmgcr
Acp5
Pcnp
Cryzl2
Tmem126a
Fbxo15
Cd164
Snrpb
Ppp1r8
Ino80c
Gnai2
Timm22
Pbrm1
Slc7a5
Ier5l
Crlf3
Hif1a
Selenop
Pradc1