ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX118692 | mESC derived neural cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX3301664: Embryonic limb

◢ SRX3301665: Embryonic limb

◢ SRX018669: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◣ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Adgra2
Hivep3
Fubp3
Cdx1
Tomm5
Mkrn1
Slc6a16
Oxnad1
Dph3
Tcp11
Zdhhc18
Slc43a1
Tm7sf3
Hrob
Cdk15
Ifitm7
Bmerb1
Tmem63c
Icam1
Prdm14
Gtpbp4
Enpp4
Ttpal
Gpcpd1
Tmem191c
Atp2a2
Mtf2
Oasl1
Abr
Rbks
Babam2
Plekhb1
Mib2
Dusp9
H2-Bl
Letmd1
Krt79
Prmt8
Dedd
Pbld2
Rhox11
Alkbh7
Acp6
Bmt2
Nek2
Rusc2
Ppdpf
Phc1
Capn3
C1qa
Cpt1a
Amacr
Acp5
Ankrd28
Tnnt1
Cfl2
Phf5a
Aco2
1810020O05Rik
Zfp438
Pyroxd1
Lipe
Stk35
Mymx
Ghdc
Sgk1
Gabbr1
Dag1
Hspb7
Fam166c
Tmem64
Irf5
Bhmg1
Shisa5
Colca2
Rasl10b
Gipc2
Lman1
Muc1
Cfap161
Smarca5
Rnf125
Wsb2
Iqgap3
Eif4e1b
Mllt6
Dlgap3
Spata33
Chmp1a
Atp5j
Spint4
Sycp3
H2-Q8
H2-Q6
Arf4
Ptpmt1
Sbno2
Uqcrc1
Stat4
Prss52
Rarb
Abcg4
Stra8
Slx1b
Uck1
Smyd4
Rpa1
Mrs2
Pbx2
Pcmtd1
Adnp
Tafa4
Zfp710
Osbpl1a
Tfrc
Sirt3
Psmd13
Pdcl3
Creld1
H2-Q9
H2-Q7
Fbxo15
Tspan9
Rita1
Mrpl37
Cyb5rl
Dennd10
Heyl
Nat8f2
D830030K20Rik
Dhx32
Slc25a51
Ado
Smim20
Erf
Rara
Cyb5r4
Dhcr24
Gm3696
Ndufs8
U2surp
B230307C23Rik
Atp5e
Asmt
Sema4d
Mbd3
Guf1
Crybg2
Spp1
Smg5
Porcn
Fam32a
Cfap20dc
Ndufa2
Ik
Ubap1
Foxn4
Cox17
BC028528
Gdf1
Cers1
Homer3
Fam25c
Ttk
Sugt1
Tecr
Pigr
Fignl1
Stub1
As3mt
Chd9
Stard6
4930503L19Rik
Rgs5
Aurkc
Sntb2
Haus1
Atp5a1
Phactr3
Chchd1
Tmem39a
Zfp526
Rbpj
Ogdh
Eva1b
Cog6
Cryzl2
Brap
Acad10
Ap5s1
A930018P22Rik
Gna12
Myh14
Wnt8a
Cacnb3
Sdha
Ccdc127
Hexb
Zfp770
Dok4
Mdk
Rhot1
Spatc1
Hagh
Fahd1
Car3
Eno1
Pdk1
Slc25a39
Fam120a
Smad6
Spa17
Gde1
Ice2
Etfa
Tuft1
Rprd1a
Lekr1
Rab8a
Fam169a
Wdr82
Tmem259
Dhx35
Hnrnpab
Gm48552
Mbtd1
Phc2
Fbln1
Eapp
H4c8
Tex14
H4c3
Slc15a1
Trim29
H3c6
Rps29
H3f3b
Sspn
Rdm1
Srsf7
Ilf2
Polr2a
H3c7
H2bc9
H4c4
H3c11
Adam5
H3c15
H3c14
H4c11
Ing1
H4c18
H3c2
Hspa5
Mettl14
Crebzf
H4c9
H3c3
H2ac19
H2ac18
Gm20594
H3c13
H2bc18
H2bc21
H2ac21
H2ac20
H2bc4
H2ac6
H4f16
H2ax
Rhobtb1
Trib3
H2bc12
H2ac12
H1f4
Arrdc2
Jund
Nabp1
Rsrp1
H3c10
Btg2
Mphosph9
2810006K23Rik
H4c17
Ubb
H1f2
Hspa8
Taf4
H4c1
Scn8a
Calr
Zbtb37
H4c12
Fam53c
Tob1
Arid5a
Taf13
Gm3448
Gm3417
Gtf2a1
Ints6
H3c4
Pcx
Tcte3
Gm3435
H4c2
Dcpp1
Hexim1
Rpl3
Calm2
Sde2
Nufip2
Junb
9030025P20Rik
Utp14b
Acsl3
Mpp7
Hsp90aa1
H3c1
Stk3
Srsf5
Insig1
Csrnp2
Sumf1
Ppp1r10
Mrps18b
Slc9a1
Dnajb9
Poldip3
Gtf2a1l
Klf6
H2bc6
Dgat2
Arl15
Ddit4
Calm1
H4c14
Rbm14
Gm21992
Gtf2b
Gpx1
Sub1
Sacm1l
Ctsl
Ier2
Znfx1
Fus
Mylpf
Raf1
Atp1a1
Cbx4
Pnp
Aplp2
Gadd45a
H2ac4
Cited2
Actb
Jpt1
Tas2r134
Eif4g2
Rnf19b
Tsc22d1
Rnaset2b
BC005537
Clu
Mat2a
Sfi1
Tubb4b
H2bc22
H2ac22
Ermard
Prdx1
H2bc11
H2ac11
Errfi1
Eif2s3y
Rnaset2a
Srsf2
Mfsd11
Sf3b1
Eif4a1
Fbxo31
H1f3
Smc3
Mknk2
H3c8
Pcna
P4ha1
Mcl1
Arl4d
Wsb1
Hsp90ab1
Srsf3
Dhx8
Zfp36l1
Btg1
Amd2
Amd1
Hnrnpa2b1
Cbx3
Gtf2f1
H2bc13
H2ac13
Selenbp1
Ndufa6
Arl6ip1
Trp53inp1
Atxn2
H2bc1
H2ac1
Slc38a2
Ftl1
Vegfa
Ifrd1
Sephs2
H2ac10
Slc38a5
H2bc8
H2ac8
Ier5
Mill1
Gcm2
Spg11
Tuba4a
Kcnn2
Dmxl1
H4bc24
H2bc23
H2ac24
H2ac23
Marchf3
Ddx5
Cep95
Slbp
Gtf3c6
Luzp1
Hjurp
A730008H23Rik
Zfand5
Tnrc6c
Sqstm1
Rhob
Pabpc1
Ppp1r3c
Dusp1
Fos
Skp1
Acly
Tob2
Klf7
Rcbtb1
Msh6
Vcl
Rnd3
Peli1
H4c6
Katna1
H2bc7
H2ac7
Dennd6a
Cep43
Slc25a3
Rps12
Gapdh
Ep400
Msmo1
Etv3l
Dnaja1
Fxyd1
Pigt
Ubc
Eef1a1
Cnga1
Hnrnph1
H2bc15
H2ac15
Gfpt2
Mafb
Ccnyl1
Slc9a3r1
Inmt
Maml1
Rps3
Epha2
H2-M5
Dppa2
Glul
Rps20
P4hb
Jun
Plk2
Styxl1
Mdh2
Clic4
Ncl
Pdia3
Mbtps1
Catsper2
Snrpe
Mterf1b
Herc2
Dhx9
Gtf2a2
Traf7
Sap18b
Sap18
Cebpa
H2bc14
AU018091
Ctnnb1
Ppp1r2
Mterf1a
Kmt5b
Cirbp
Sirt1
Ttc41
Tra2b
Hsp90b1
Impdh2
Trpm3
Depdc1a
Abcb7
Ipmk
Mad2l1bp
Ndufs7
Idi1
Gria3
St3gal3
Itpr1
Fasn
Fanci
Tcta
Rhoa
Ankrd11
Hhex
Frmd6
Uspl1
Mertk
Vamp1
Ppp1r15a
Plekha4
Kctd5
Usp37
Cnot9
Urgcp
Musk
Tsc22d2
Ndel1
Slc25a30
Sesn2
Slc44a3
Hmga1b
Hmga1
Napepld
Susd6
Map1lc3b
Gls
Wdr77
Atp5pb
H2bc3
Klf10
Rps6
Paxip1
Por
Dpp9
Txnip
Pdhx
Apip
Fdx1
Klhl21
Dusp5
Dnajb1
Mrpl1
Lilr4b
Acer2
Mrpl39
Caap1
Ncoa3
Erdr1
Clcn4
Gpx4
Dnajb4
Chchd2
Nfkbia
Il1b
Hspa1l
Hspa1a
Mylip
Grcc10
Ciao2b
Rsrc2
Kntc1
Ctnna3
Cdkn2aip
Ifna6
Rnf103
Asb2
Med23
Mpc1
Kdm4c
Socs3
Dgat1
Ccdc110
Fyco1
Acy3
Arhgap19
Man1a
Fth1
Chordc1
Atp1b2
Sertad2
Proca1
Gas1
Tagap1
Serinc3
Rps2
Cd81
Rpl7a
Med22
Avpr1a
Txn1
Rpl23
Zfp119b
Slc31a1
Fkbp15
Nudt4
Eif3a
D230025D16Rik
Taf1d
4931406C07Rik
Whamm
Vgll4
Rpl13
Fmc1
Cyp2d9
Ern1
Adpgk
Gm51598
Zswim3
Acot8
Actn4
Irs2
Hspa1b
Rcl1
Cmas
Zswim8
Gadd45g
Degs1
Rplp0
Cebpd
Sertad1
Cyren
Lrrc28
Mapkapk2
Exosc2
Ddx3x
Rps24
Nrd1
Gclc
Rps27rt
Rab13
Cxcl5
Atp5g3
Ncoa4
Glce
Cpm
H3f3a
Ccnt1
Sgf29
Snx18
Mak16
Igfbp2
Ppia
Nfe2l2
Eef2
Rpl9
Lias
Pcif1
Ulk2
Rps9
Rbbp6
Baiap2
Shld2
Glud1
Gpr141
Tti2
Cyp2f2
Rbm39
Zfp119a
Vmn2r4
Actg1
Nr6a1
Mrps28
Arrdc3
Nsrp1
Map2k4
Scnn1g
Alox12b
Eif4e
Dip2b
Defb8
Pik3r3
Mapk1
Pigl
Ncor1
Ankrd39
Klf2
Snorc
Rcn2
Npm1
Hmox2
Gadd45b
Ndufaf3
Tuba1c
Rbm4b
Zfp959
Midn
Plec
Slc5a3
Mrps6
Commd1
Adk
Abcb8
Vps52
Rps18
Naca
Bbs2
Trappc3
Sod1
Rpl17
Ost4
Map2k2
Ddx24
Ccar1
Zfp963
Slc16a10
Rtn3
Rab33b
Csrnp1
Nfe2l1
Slc20a1
Rpl8
Etfrf1
Casc1
Plk3
Mapk14
Kdm5a
Jak1
Nfkbiz
Ctdp1
Unc5b
Ggcx
Epc1
Eif1
Tpcn2
Slc2a1
Nme1
Cxcr3
Tango2
Ksr1
Ttc7
Rnf38
Smurf2
Ppib
Med21
Taf4b
Cpsf1
Rnd1
Mob1b
Ly6l
Dnajc1
B2m
Paip2
Ssbp1
Id3
Hint1
Bsg
Rnase4
Ang
Gpat4
Pfn1
Setd5
Rhou
Spry4
Edrf1
Cat
B4galt3
2410002F23Rik
Lgr4
Irf8
Pcf11
Kcnk5
Sgpl1
Tiparp
Pgrmc1
Net1
Fxr2
Taco1
Herpud1
Top1
Srp19
Knl1
Bclaf1
Acer3
Lsm14a
Ubr3
Rpl15
Nkiras1
Usp53
Rapgef6
Psme4
Phf11d
Ctbs
Snrpg
Ppp6r3
Ptma
Fbxo8
Cep44
Atp5b
Ywhag
Knop1
Iqck
Fam43a
Acad12
Hs3st3b1
Mtr
Kbtbd7
Esyt2
Ints14
Ell2
Wdr25
Wars
H2aw
Fam71f1
Rpl41
Plpp1
Pikfyve
Idh1
Tgoln2
Tgoln1
Nop58
Flnb
Atg4d
Odc1
Nt5dc3
Rpl10a
Alg1
Rab5b
Ints8
Crot
Ptpa
Crat
Rnf149
Rffl
Manf
H2az1
Rab43
Kansl2
G3bp1
Nfyb
Mtfr1
Becn1
Sec22b
Selenok
Irak2
Dynll1
Tab1
Fra10ac1
Ddit3
Sfpq
Endog
Bcl2l1
Trmt2a
Ranbp1
Ptp4a1
Ahcy
Lpar5
Zp1
Ulk1
Arc
Sorbs1
Gpi1
Cped1
Sp1
Slc35d1
Tpi1
Lrrc8a
Dytn
Rps28
Ndufa7
Pih1d1
Aldh16a1
Eprs
Cebpb
Agbl5
Zfp930
Snx29
Rbp4
Neu1
Atl2
Tpcn1
Rack1
Mrpl45
Iqcd
Vmn1r205
Slc18a1
Atp6v1b2
Id2
Cltc
Stat2
H2-K1
Ddx20
Atp6v0a1
Mpv17l2
Gorasp2
Hspb8
Cnbp
Trf
Mrpl44
Usp42
Nr3c2
Ddost
Daam1
Srsf6
Matr3
Akap8l
Tmem175
Gak
Sptan1
Nasp
Hif1an
Dbi
3110009E18Rik
Ugdh
Slc36a1
Hmgcr
Pcnp
Tmem126a
Cd164
Snrpb
Ppp1r8
Ino80c
Gnai2
Timm22
Pbrm1
Slc7a5
Ier5l
Crlf3
Slc2a9
Hif1a
Selenop
Pradc1
Cct7
Atp1b1
Ube2h
Stard5
Pdia4
Pank2
Depdc7
Cap1
Pdlim7
Isoc2a
Dtwd2
Cln8
Cdc5l
Plcb1
Ltbp1
Unk
Ripk2
Polr3e
Tbc1d13
Ddb1
Atad2b
Tdp2
Clk1
Acot13
Zc3h13
Jarid2
Foxp2
Arhgap29
Tsnaxip1
Scp2
Ranbp10
Dync1h1
Amotl2
Rps3a1
Pdcd4
F2r
Cdh1
Spg7
Fn1
Aldoa
Pak3
Mrpl15
Hnrnpc
Cdc42
Angptl4
Phf14
Olfm5
Ndufa4