ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6039039 | iPS derived chondrocytes
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX3584302: iPS derived chondrocytes

◢ SRX3584303: iPS derived chondrocytes

◢ SRX3584304: iPS derived chondrocytes

◢ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◢ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◢ SRX3584310: iPS derived chondrocytes

◢ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◣ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2B
ZNF335
RABL2A
DYNC1LI2
PSMD1
PSMG2
CEP76
CACTIN
NME6
IPO13
MAPKAPK5
POLR3F
DZANK1
SUDS3
EFTUD2
CCDC103
NVL
NEUROG3
DPH6
VTI1B
NUP85
VDAC2
DCTN1
RPL21
C19orf48
HSPA9
TBCK
AIMP1
NUP205
NCLN
STAM
GOSR2
MRPS7
GGA3
TSNAX
RWDD1
SKP1
POLR2E
HADHB
HADHA
STAM2
TTC8
ATP5MG
PNO1
SLC35B1
SEC61B
ALG2
IRGQ
ZNF576
MRPS5
RPS23
ATP6AP1L
SRD5A1
PAK1IP1
C6orf52
SMC2
BLCAP
UPF2
TSN
FARSB
RBKS
BABAM2
VARS1
PDAP1
BUD31
CAPRIN1
SUPV3L1
EIF4ENIF1
REXO1
PES1
ACTR10
COX7A2L
EXOSC5
BCKDHA
ZRANB2
LYRM4
FARS2
TMED1
SELENOF
HS2ST1
GOLGA5
FGFRL1
IQCG
RPL35A
FAM104A
C17orf80
TM9SF1
USP1
PI4KB
PSMD12
RBBP5
ICE1
ADK
AP3M1
NDUFA4
PTGES2
RPS27A
CLHC1
PAF1
COMMD1
CCT4
VEZT
FGD6
NEUROG1
ISCU
SART3
RPS12
UFM1
RABGGTB
XPNPEP3
ST13
ANAPC7
OSGEP
APEX1
PCBP1
ATOH1
BAG6
PROSER1
NHLRC3
DDX39B
SF3B3
COG4
ST18
MYRIP
RBL2
SHB
HESX1
PIN4
STK36
RNF25
EIF2S3
RPS29
LRR1
TAF9
RAD17
AK6
LPIN1
DENND1A
SEC11C
PMAIP1
ARHGAP11A-SCG5
ARHGAP11A
GADD45GIP1
CALM2
KLF17
SUCLG1
NDUFA10
BNIP3
TPRA1
CCDC92
HES1
CERKL
GADD45G
SKIL
UBE2I
RPL7
RDH10
TLE2
RBPJ
PCBD2
ZNF383
GATA4
MRTO4
EMC1
PDHX
APIP
TMEM70
ACOT2
AMOT
GORAB
NEUROG2
HSPA1B
TIGD1
EIF4E2
GTF3C4
DDX31
DTNB
NKIRAS1
NR1D2
UPF3A
ALKBH5
TMPPE
GLB1
CNPY2
GSR
CDC73
RPN1
ZGPAT
ARFRP1
OAZ3
MRPL9
AXDND1
PRUNE2
APLN
MBD2
ZNF503
C15orf61
CPVL
CHN2
GPR108
PKIB
LDLRAD4
SPCS1
GLT8D1
PLA1A
BICRA
ANKLE2
DSCAML1
SRSF11
LRRC40
SCAMP4
ADAT3
RAN
DUSP4
MACROH2A1
CABIN1
DLX4
ZNF397
CBX3
INKA2
KIF21B
INSM1
RSPO4
ATP6V0A4
BAMBI
MRPL38
CIAO2A
TBC1D8
FOXP2
DDX3X
MEPCE
ZCWPW1
PDE12
CLDN15
SLC40A1
HNRNPD
JAKMIP1
OLIG3
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
METTL11B
RYBP
ARHGAP28
NCOA2
GRHL2
RBBP8NL
PLEKHA5
ANXA9
DLL4
LIN28A
STRADA
USP17L15
MAST2
TCHP
PAH
ASCL1
IGF2
TAS2R7
RARA
BTBD3
ZNF746
SGK1
CDS1
MID1
RUNX1T1
RNF32
CHPT1
FANK1
C16orf91
PDCD2
VENTX
H3-3A
ACOT1
DCLRE1C
TBL1XR1
CEMP1
YAP1
PXMP2
POLE
KAZALD1
LCOR
RIMS2
RBBP7
TRAP1
ZNF853
ZNF891
ZNF10
PCLO
KAT6B
ARL14EP
PRDM10
KDM1A
TENT4B
RPS10-NUDT3
RPS10
EIF4H
HOXB9
MTCH2
CHD8
OTX1
CCDC169-SOHLH2
CCDC169
RIMS1
ZNF81
CENPBD1
SPIN1
APBB1IP
FAM53B
OTP
KCNJ4
PTPRG
SP7
CCDC88C
CCNDBP1
HINT1
BAZ1A
LIX1
STRA6
WNT3
PODXL
FAM120B
TNFRSF19
PAX7
COMT
TRIM45
GOLM1
MACROD2
SUCLG2
GNG4
CNOT2
ZBTB25
ZBTB1
ERI1
ALDH3A2
PLAGL1
RPS24
DUSP12
CDX1
UPK2
NELFA
PRSS47
SHBG
FXR2
YTHDF2
EVC2
SEMA3C
PKNOX1
GEMIN7
KIF26A
BTG1
DHRS3
SMARCA4
SH2B1
SERTAD2
SYDE2
NFAM1
ZNF292
ANKRD28
PARP16
CASC3
HOXA4
IGFBP2
HOXA2
BBS9
ID2
TLE4
SP5
ANK2
PDHB
CLGN
MALRD1
RARB
GRSF1
ARSG
SPATC1L
NR2F1
KMT2A
ZFHX4
MRPL34
PRDM12
HOXB4
RASSF2
FLOT1
NDUFS7
DUSP6
INAFM2
BFSP1
SH3BP2
RNF149
ZNF608
RGS12
HOXA3
FOXP1
HUS1
MTRNR2L2
CS
MTRNR2L8
ARID5A
RAI14
NEO1
HEXIM2
ZFHX3
SP2
PARK7
CCPG1
C15orf65
RPS6KA1
SEC14L1
HOXC5
C11orf24
KCNAB2
ARHGAP24
SLCO4C1
KDM3A
GRHL3
CCDC88A
SPECC1
ID1
BRWD1
ARHGEF10L
NADK
STK38
VOPP1
NBEAL2
SKIV2L
NELFE
NKD1
CPSF4L
LPCAT3
MTMR4
BIN2
FGR
DIAPH1
CDCA7L
NBPF1
ZNF76
MEF2C
CAMTA1
USP15
SNX3
WNT10B
LNPEP
CDC42EP3
DENND2D
CCDC174
DIAPH3
REC8
RSRC1
POR
ZCCHC3
NFKBIA
IQCH
AAGAB
CD38
TRAF4
ING1
VAV1
HEBP2
CMTR1
ATP23
PNKD
PCNA
RASSF5
POLR2J3
SPACA1
EXOSC4
MINDY2
OTUD7B
IQGAP2
HES3
PKN2
CLDN2
FAM110A
PPIB
PDPN
SMARCD2
PLCB2
POLR3A
PCTP
IFRD2
H6PD
PEX14
NDFIP2
CEP41
HMGCS1
PRDM1
CFD
SLC35E2B
PXYLP1
TBRG4
HIBADH
ARIH2
PLEKHO2
RNF139
JAK3
SH3TC1
CYCS
PDE4D
ZDHHC4
PKM
CCDC114
ZNF740
CSAD
BNIP2
DYNLL1
GTF3A
SOD2
PIK3AP1
KANSL3
HNRNPA2B1
LTBR
DPP9
ADM
CLIC4
CBFA2T3
NR2C1
KCTD6
AKIRIN1
ADCY7
PRSS56
DGKZ
TTI2
ATXN1L
SLC35E2A
PTGES3
HOXB3
HES5
SRPRA
FCHSD2
TMEM222
SSX2IP
FAF2
C12orf29
ARHGEF1
RARG
ZNF341
CD164
USP3
CTTN
SLC39A13
ANKRD13D
TRMT6
MCM8
TBX2
RMND5A
CSRNP1
MRPS24
TRERF1
SNAPC3
BAZ1B
LAPTM5
TXNRD1
USP42
NOTCH2NLA
ARHGAP4
UNC13D
STX18
SLC10A2
SBNO2
CLTC
PIP4P2
MAP2K1
VANGL2
MAD1L1
MTF2
KCNH2
IL21R
PPCDC
MTCH1
DGAT2
CENPH
ZNF25
RNF125
ATG16L2
RASGRP2
PEAK3
THRAP3
COX5A
MRPS31
GFRA3
NOTCH2NLC
PKDCC
ZSWIM6
EPM2A
RAD50
PIKFYVE
ZBTB17
KAT6A
SDE2
ARL4A
UROD
HECTD3
PSMD3
LRIG3
FBXO41
SMPD1
ZNF414
QPRT
RFESD
ADAM17
RXRA
KEAP1
RWDD2A
PGM3
MC1R
MTRF1L
WTAP
LSM5
MAGEF1
ERLIN2
RCOR1
CBWD5
CBWD3
NIBAN3
SERPINB1
PRKDC
MCM4
PANK2
ZNF318
ASNS
USPL1
HMGB1
PEX3
ADAT2
ATAD3B
UBL7
DYNLT1
DONSON
VPS37C
C1orf159
TUBB
FXYD2
HOXD3
NOTCH2
OR2L13
GPATCH8
NGRN
MCU
RNF103-CHMP3
PNRC2
PHF19
MAPKAPK3
CISH
TCF4
TIGD5
EEF1D
CBWD6
RER1
MORN1
UPP1
ARF3
C18orf32
HOXC6
BUD13
IFNGR1
NIBAN2
DDX23
FAM227B
FABP5
DTWD1
GABRB2
NCBP2AS2
NCBP2
ATAD3A
USP21
NOTCH2NLB
LRCH4
FBXO24
KIF1C
INCA1
KMT5A
CCDC59
CYB5R4
HPF1
TDP2
CNOT6
BHLHE40
ACOT13
NINJ2
RAP1GAP2
NUDT15
ARHGAP45
SYPL1
NANP
YY1AP1
DAP3
C12orf65
UBE2L3
RIMBP3C
RIMBP3B
ARHGEF18
PCMT1
AVL9
CDS2
NMNAT1
LZIC
CEP135
ASB1
SLC7A5
MYCBP2
TSPAN4
POLR2L
ATG5
CACYBP
CCNL1
SEH1L
PTDSS1
MTERF3
MFN2
ZCCHC24
GSPT1
ITPRIP
KRI1
EIF3D
C21orf91
SNUPN
LTB4R
LANCL2
EIF5
UNK
ADORA2A
HYLS1
HOXC4
SREBF2
PSMF1
HMGCL
MTMR1
ZNF219
TBX3
RPLP1
RITA1
DDX54
GFER
ASH1L
GTF2H3
EIF2B1
BRAT1
CTSC
DISP3
TLE3
TAS1R1
NOL9
UBIAD1
FDX1
IMPA1
CD63
USP34
TMEM199
POLDIP2
MAPK6
THUMPD3
DLX2
FNTA
NAA40
SLC16A6
LAMP1
MT2A
NOC4L
DDX51
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ZNF395
ARHGAP27
MKRN2
ARF4
ZFAND2A
MBD6
PDZD2
NREP
CARMIL1
BRAP
ACAD10
ATOH8
IL6R
POLD2
FKBP1A
ACVR1
EIF1B
PTK2B
LONRF3
PGD
RPS3
PGLS
SLC25A6
RPL8
ATG101
TKFC
DDB1
MDM2
HNRNPF
CHST11
ELOVL6
RCOR3
RIMBP3
GARS1
TMEM65
CDC42
FAF1
DNAH7
DYNC2H1
CSNK1A1
BOD1L1
GFUS
CNPY3
POU2F1
TRDMT1
GALE
DHRS4L2
DHRS4
WBP1L
DNAJB2
SPRY2
SMIM20
NCKAP5L
SMG6
RERE
FKBP5
EHD1
SPPL2A
UBE2K
PPIL4
CXXC4
MRPL20
MGST1
PEX2
DENND4B
C6orf89
ABHD12
RCC2
ZBTB45
POLG
SNAPC5
NEURL2
CTSA
PPP4R3B
TPP2
CCDC43
TBL3
ZC3H6
GPCPD1
RAC2
CBX5
PRKAB1
IPP
NUS1
ELMO1
CLCN3
FOS
NCBP3
RBSN
B3GALNT2
TMEM41A
SLC35A1
PTP4A2
GFRA1
CD93
TAF12
RAB11FIP1
INTS5
PSTPIP1
CLN5
MRPS28
ZNF593
RNF19A
RGS14
LRRC59
C1orf232
THYN1
RNF216
ETFA
ACAD8
DCP1A
TRAM1
PRR19
PAFAH1B3
PRKAG1
SPDYE14
SPDYE10P
PPP1R8
SPTBN5
SOX12
NDUFV1
MYADM
GATD3B
GATD3A
ZBTB12
MEIS2
MEIS3
SEPTIN2
HDLBP
FAM3C
STARD3
RBM15B
FADS2
FADS1
DRAP1
C11orf68
IQSEC1
ATXN2
SECISBP2L
MARCHF7
IDS
ABHD2
ZNF774
UHRF2
ABCF1
SNX15
LGALS1
CNR1
WDR53
SEC13
FBXO45
CAP1
ARID1A
DTX2
DHDDS
RCN2
OSBPL3
DBI
CYP2W1
C2orf76
SLC43A3
MIDEAS
NOL4L
RAB3D
PSMD9
HPD
BIRC2
RUNX3
CLK1
MT1G
RNF168
PURB
ADPGK
TRNAU1AP
FOXN2
EXD1
CHP1
NIBAN1
CPQ
ZFAND3
SPATC1
LST1
TESMIN
RNF34
HBS1L
RFC2
PDZRN3
MAP2K3
MVK
GNA13
TMEM123
URGCP
ANKRD36C
YARS1
SLC39A7
S100PBP
RXRB
TCTE3
ERMARD
CELF4
CCNL2
SIPA1
SEMA4B
PHF13
ZFPL1
CDCA5
TMEM230
NBN
MESD
EIF3B
DPP8
POLDIP3
ZNF212
KATNA1
NSUN6
ARL5B
TAF15
ICE2
ZZZ3
ANKHD1-EIF4EBP3
ANKHD1
CSRNP2
MYL12B
SNAP29
PI4KA
MRPS15
GZF1
ZCCHC4
FES
IGFBP6
CGAS
TRIAP1